Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021711
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   2.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.3  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 201 RSKIASLWSELSGASGFSDDSHNNN 127
           RSK   + S LS +  +S++ +NNN
Sbjct: 297 RSKEPKIISSLSNSCNYSNNYYNNN 321


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 324 LIPFQKVICCIYRWYRFLVNS 262
           L P Q     ++RWY+F+  S
Sbjct: 233 LCPAQGFPVPVHRWYKFIEGS 253


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 203 ESLILGVNDEGGENGP 250
           E +I   NDEGG+  P
Sbjct: 569 EEIINSSNDEGGKTSP 584


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,905
Number of Sequences: 438
Number of extensions: 4063
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)