Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021711
(688 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g73430.1 68414.m08500 sec34-like family protein contains Pfam... 48 6e-06
At2g38720.1 68415.m04755 microtubule associated protein (MAP65/A... 29 2.9
At2g20210.1 68415.m02363 leucine-rich repeat family protein cont... 29 2.9
At4g01520.1 68417.m00196 no apical meristem (NAM) family protein... 29 3.8
At3g17900.1 68416.m02280 expressed protein 29 3.8
At1g78410.1 68414.m09137 VQ motif-containing protein contains PF... 29 3.8
At1g78310.1 68414.m09126 VQ motif-containing protein contains PF... 29 3.8
At1g61290.1 68414.m06908 syntaxin, putative (SYP124) similar to ... 29 3.8
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 28 5.0
At4g06536.1 68417.m00948 hypothetical protein 28 5.0
At5g66770.1 68418.m08416 scarecrow transcription factor family p... 28 6.7
At2g32240.1 68415.m03940 expressed protein contains Pfam profile... 28 6.7
At4g05420.1 68417.m00824 UV-damaged DNA-binding protein, putativ... 27 8.8
At3g57760.1 68416.m06434 protein kinase family protein contains ... 27 8.8
At3g04960.1 68416.m00538 expressed protein low similarity to SP|... 27 8.8
At2g41740.1 68415.m05159 villin 2 (VLN2) nearly identical to vil... 27 8.8
At1g62300.1 68414.m07028 WRKY family transcription factor simila... 27 8.8
At1g25410.1 68414.m03154 adenylate isopentenyltransferase 6 / ad... 27 8.8
>At1g73430.1 68414.m08500 sec34-like family protein contains Pfam
PF04136: Sec34-like family profile; similar to Conserved
oligomeric Golgi complex component 3 (Vesicle docking
protein SEC34 homolog) (p94) (Swiss-Prot:Q96JB2) [Homo
sapiens]
Length = 784
Score = 48.0 bits (109), Expect = 6e-06
Identities = 18/57 (31%), Positives = 38/57 (66%)
Frame = +3
Query: 513 EQLLADQNKLSGIGDDIKKRLHYFTQVEHLSQRLNSPTMSVNSDAFFNVLAKIDECL 683
++LL ++ KL + ++ +L+YF ++E++S SP M+V++ F +L ++DEC+
Sbjct: 163 DRLLMEKQKLMEFAEALRSKLNYFDELENVSSNFYSPNMNVSNSNFLPLLKRLDECI 219
>At2g38720.1 68415.m04755 microtubule associated protein
(MAP65/ASE1) family protein low similarity to myosin
[Schistosoma japonicum] GI:3941320; contains Pfam
profile PF03999: Microtubule associated protein
(MAP65/ASE1 family)
Length = 587
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +1
Query: 385 LEDRRNECISLNEQINEAMSDLHKLTEQYNF-VSNKTNALHNRVSSY 522
L+D RNE +++N +S +H+L+E +F S N++H+ ++ +
Sbjct: 160 LQDLRNEKAVRLQKVNSYISAVHELSEILSFDFSKALNSVHSSLTEF 206
>At2g20210.1 68415.m02363 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 604
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +2
Query: 65 LSLLCRTQNMDTMSLKEIQSKLLLWESSEN---PLAPLNSDQREAILDLE 205
L++LC T+ + + +++S +L W SE PL L RE + LE
Sbjct: 185 LNVLCVTETSELLRTSKLRSLVLRWIRSEKHVEPLCKLLIQSRETLTSLE 234
>At4g01520.1 68417.m00196 no apical meristem (NAM) family protein
similar to NAC1 (GI:7716952) {Medicago truncatula};
contains Pfam PF02365 : No apical meristem (NAM) protein
Length = 302
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 219 PKIKDSRSKIASLWSELSGASGFSDDSHNNNL 124
P I I S W A+ FSD+++NNNL
Sbjct: 260 PMIAQQEDLILSEWEGFIAATFFSDNNNNNNL 291
>At3g17900.1 68416.m02280 expressed protein
Length = 838
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -2
Query: 282 YRFLVNSLFSIGPFSPPSSLTPKIKDSRSKIASLWSELSGASGFSDDSHNNNLLC 118
+ F+V FS+G PS+ K+K S + ++ E G SG S D + + C
Sbjct: 566 HSFIVKPAFSVGSNLKPSAARNKLKSSSLSLPTVNFERKG-SGLSGDQYAVMVSC 619
>At1g78410.1 68414.m09137 VQ motif-containing protein contains
PF05678: VQ motif
Length = 108
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 267 NSLFSIGPFSPPSSLTPKIKDSRSKIASLWSELSGASG 154
N++ + GPF PS+ + D SKI +L G G
Sbjct: 40 NAIVAAGPFDSPSAFDGRCYDGGSKIGEDTRQLHGGGG 77
>At1g78310.1 68414.m09126 VQ motif-containing protein contains
PF05678: VQ motif
Length = 311
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = +3
Query: 489 NKCSTQQSEQLLADQNKLSGIGDDIKKRLHYFTQVEHLSQRLNSPTMSVNSDAFFN 656
+K + + S G++ R HY Q+ LS +++ PT S +S + N
Sbjct: 2 DKSCNSSGDSSAVSASATSSTGNNTTNRDHYLRQLNKLSHKISKPTNSSSSVSVAN 57
>At1g61290.1 68414.m06908 syntaxin, putative (SYP124) similar to
syntaxin-related protein Nt-syr1 GI:4206787 from
[Nicotiana tabacum]
Length = 303
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/95 (21%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Frame = +1
Query: 235 WRKWTNRKETVDQKSIPSVDTTYDFLEWYERLCDDNMKTEDVPYQCYYKQLEDRRNECIS 414
++K+T+ K+ I S T + +++E + +N+K + YK L+D EC +
Sbjct: 9 FKKYTDLKQQAQMDDIESGKETMNLDKFFEDV--ENVKDNMKGVETLYKSLQDSNEECKT 66
Query: 415 LN--EQINEAMS----DLHKLTEQYNFVSNKTNAL 501
++ +++ E + D+ ++ ++ + K AL
Sbjct: 67 VHNAKKVKELRAKMDGDVAQVLKRVKMIKQKLEAL 101
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 28.3 bits (60), Expect = 5.0
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -1
Query: 358 HLQSSYYHHRVAHTIPKSH 302
HL Y HHR+ H +P H
Sbjct: 639 HLPHQYLHHRLRHILPSRH 657
>At4g06536.1 68417.m00948 hypothetical protein
Length = 169
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 495 CSTQQSEQLLADQNKLSGIGDDIKKRLHYFTQVEHLSQRLN 617
C +++ E A +NK+ G G D +K+ YFT HL +N
Sbjct: 8 CESEKHEW--AKENKVVGCGYDPRKKKVYFTVNSHLVHVIN 46
>At5g66770.1 68418.m08416 scarecrow transcription factor family
protein
Length = 584
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +3
Query: 504 QQSEQLLADQNKLSGIGDDIKKRLHYFTQVEHLSQRL--NSPTMSVNSDA 647
+ S+ LL + +S +GD ++ YFT E LS RL NSP S +S +
Sbjct: 234 EASKTLLQIRESVSELGDPTERVAFYFT--EALSNRLSPNSPATSSSSSS 281
>At2g32240.1 68415.m03940 expressed protein contains Pfam profile:
PF04508 viral A-type inclusion protein repeat
Length = 775
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -2
Query: 240 SPPSSLTPKIKDSRSKIASLWSELSGASGFS 148
S SSLT K++D KI S +L+ ASG S
Sbjct: 262 SEASSLTEKLRDLEGKIKSYEEQLAEASGKS 292
>At4g05420.1 68417.m00824 UV-damaged DNA-binding protein, putative
similar to UV-damaged DNA binding protein (GI:12082087)
[Oryza sativa]; contains Pfam PF03178 : CPSF A subunit
region
Length = 1088
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +1
Query: 235 WRKWTNRKETVDQKSIPSVDTTYDFLEWYERLCDDNMKTEDVPYQCYYKQLED 393
WR + N K T + ++ D FL+ +D K+ +V + K++E+
Sbjct: 1031 WRSFNNEKRTAEARNFLDGDLIESFLDLSRNKMEDISKSMNVQVEELCKRVEE 1083
>At3g57760.1 68416.m06434 protein kinase family protein contains
similarity to protein kinases
Length = 378
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +1
Query: 259 ETVDQKSIPSVDTTYD-FLEWYERLCDDNMKTE-DVPYQCYYKQLEDR 396
E D K P + +YD ++ C N + DV Y+CY L+DR
Sbjct: 31 ECCDGKCNPIKNFSYDQIIKATNNFCQSNRASRIDVYYRCYKGMLDDR 78
>At3g04960.1 68416.m00538 expressed protein low similarity to
SP|P32380 NUF1 protein (Spindle poly body spacer protein
SPC110) {Saccharomyces cerevisiae}
Length = 556
Score = 27.5 bits (58), Expect = 8.8
Identities = 22/73 (30%), Positives = 33/73 (45%)
Frame = +1
Query: 259 ETVDQKSIPSVDTTYDFLEWYERLCDDNMKTEDVPYQCYYKQLEDRRNECISLNEQINEA 438
+T+D K+ DF + + + M+ E + KQLE R NE LNE I
Sbjct: 161 KTIDAKTCDLDMKVKDF-DLKQTTESERMRKETELMETSLKQLEARENELRLLNETIQGK 219
Query: 439 MSDLHKLTEQYNF 477
+L K ++ NF
Sbjct: 220 SMELEK--KEVNF 230
>At2g41740.1 68415.m05159 villin 2 (VLN2) nearly identical to villin 2
(VLN2) [Arabidopsis thaliana] GI:3415115
Length = 976
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 146 SENPLAPLNSDQREAILDLESL--ILGVNDEGGENGPIEKRLLTKNLYHL 289
SENP+ ++ +REA L E + G+ E N P K+ L K + L
Sbjct: 926 SENPVTGIDFKRREAYLSEEEFQSVFGIEKEAFNNLPRWKQDLLKKKFDL 975
>At1g62300.1 68414.m07028 WRKY family transcription factor similar
to putative DNA-binding protein GI:7268215 from
[Arabidopsis thaliana]
Length = 553
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 382 QLEDRR--NECISLNEQINEAMSDLHKLTEQYNFVSNKTNALHNRVSS 519
++ED+R NE + L +++ + D KL E VSN +L + S
Sbjct: 147 EMEDKRAKNELVKLQDELKKMTMDNQKLRELLTQVSNSYTSLQMHLVS 194
>At1g25410.1 68414.m03154 adenylate isopentenyltransferase 6 /
adenylate dimethylallyltransferase / cytokinin synthase
(IPT6) identical to adenylate isopentenyltransferase
(IPT6) [Arabidopsis thaliana] GI:14279064
Length = 342
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 252 IGPFSPPSSLTPKIKDSRSKIASLWSEL 169
I PFSP SSL+ D R K LW ++
Sbjct: 161 IDPFSPGSSLSTICSDLRYKCCILWVDV 188
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,513,122
Number of Sequences: 28952
Number of extensions: 291805
Number of successful extensions: 936
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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