Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021710
(626 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 113 1e-26
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 113 1e-26
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 27 1.7
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 27 2.9
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 26 3.9
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra... 26 5.1
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 25 9.0
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 113 bits (273), Expect = 1e-26
Identities = 53/90 (58%), Positives = 55/90 (61%)
Frame = +1
Query: 256 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXX 435
TSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 62 TSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKR 121
Query: 436 XXXXXXXXXXXXXXXXQARGHIIERFPSFP 525
ARGH IE P P
Sbjct: 122 YAIASAVAASGVPSLLLARGHRIEEIPEVP 151
Score = 79.0 bits (186), Expect = 5e-16
Identities = 36/62 (58%), Positives = 46/62 (74%)
Frame = +2
Query: 71 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 250
++ ARP VS+Y+ K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG
Sbjct: 1 MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 251 HQ 256
HQ
Sbjct: 60 HQ 61
Score = 48.8 bits (111), Expect = 6e-07
Identities = 21/38 (55%), Positives = 29/38 (76%)
Frame = +3
Query: 507 KIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKV 620
+IPE+PLVV D VQ KTK+AV L+ +KA+ D++KV
Sbjct: 146 EIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKV 183
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 113 bits (273), Expect = 1e-26
Identities = 53/90 (58%), Positives = 55/90 (61%)
Frame = +1
Query: 256 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXX 435
TSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 62 TSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKR 121
Query: 436 XXXXXXXXXXXXXXXXQARGHIIERFPSFP 525
ARGH IE P P
Sbjct: 122 YAISSAVAASGVPSLLLARGHRIEEIPEVP 151
Score = 79.8 bits (188), Expect = 3e-16
Identities = 37/62 (59%), Positives = 46/62 (74%)
Frame = +2
Query: 71 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 250
++ ARP VS+YS K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG
Sbjct: 1 MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 251 HQ 256
HQ
Sbjct: 60 HQ 61
Score = 48.4 bits (110), Expect = 8e-07
Identities = 21/38 (55%), Positives = 29/38 (76%)
Frame = +3
Query: 507 KIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKV 620
+IPE+PLVV D VQ KTK+AV L+ +KA+ D++KV
Sbjct: 146 EIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKV 183
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 27.5 bits (58), Expect = 1.7
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +2
Query: 209 KNSRQPYCVSKEAGHQPVLNHGVLDVLSP 295
++ +PY ++ + + P+ N G LD++SP
Sbjct: 1054 EDGNEPYAITDDNDYLPMANTGSLDLVSP 1082
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 26.6 bits (56), Expect = 2.9
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = -3
Query: 534 LQPREARESFNNVSSSLNERWDAASSNGCRQGRSPLSEVDATVPTPP 394
++P + +S NN +++ S ++G + + E+D T P PP
Sbjct: 1 MEPIQKMDSLNNKEGQPDKKRKKHESE--KEGENEVLEIDVTKPVPP 45
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 132 APCTVSLFSEYTDTKGRATDRLISLL 55
A C V ++SEYT G ++ L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515
>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
3-phosphatidyltransferase Pis1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = -1
Query: 89 KVG-LPIDSFRYFSEAIPLKY-TLIAVI 12
K+G LP+ SF Y + +PL Y TL+AV+
Sbjct: 186 KLGYLPVPSFIYSTGELPLSYPTLLAVL 213
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = -3
Query: 516 RESFNNVSSSLNERWDAASSNGCRQGRSPLSEVDATVPTPP 394
R+S V+ N W + GC G L + A + PP
Sbjct: 178 RDSTRQVTIVPNRHWGGNGAIGCGVGHGVLHRLPAPLSGPP 218
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,347,261
Number of Sequences: 5004
Number of extensions: 43488
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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