Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021710
(626 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 116 1e-26
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 116 1e-26
At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin; g... 31 0.47
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy... 30 1.1
At1g26400.1 68414.m03220 FAD-binding domain-containing protein s... 30 1.4
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp... 29 2.5
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp... 29 2.5
At3g10310.1 68416.m01237 kinesin motor protein-related similar t... 29 3.3
At4g39480.1 68417.m05585 cytochrome P450 family protein contains... 28 4.4
At3g50110.1 68416.m05478 phosphatase-related similar to PTEN1 GI... 28 4.4
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 28 5.8
At3g12430.1 68416.m01548 expressed protein ; expression supporte... 28 5.8
At5g42390.1 68418.m05161 metalloendopeptidase identical to chlor... 27 7.7
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 27 7.7
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 116 bits (279), Expect = 1e-26
Identities = 54/90 (60%), Positives = 56/90 (62%)
Frame = +1
Query: 256 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXX 435
TSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 68 TSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKR 127
Query: 436 XXXXXXXXXXXXXXXXQARGHIIERFPSFP 525
ARGH IE P P
Sbjct: 128 HAIVSAIAATAVPALVMARGHKIENVPEMP 157
Score = 67.7 bits (158), Expect = 6e-12
Identities = 34/63 (53%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Frame = +2
Query: 74 SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 247
+ ARPLV+V + T Q LP V AP+RPD+VN VH +S NSRQPY VSK+A
Sbjct: 5 AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64
Query: 248 GHQ 256
GHQ
Sbjct: 65 GHQ 67
Score = 35.9 bits (79), Expect = 0.022
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +3
Query: 510 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILK 617
+PE+PLVV+D + + KT A+ L+++ A+ D K
Sbjct: 153 VPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEK 188
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 116 bits (279), Expect = 1e-26
Identities = 54/90 (60%), Positives = 56/90 (62%)
Frame = +1
Query: 256 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXX 435
TSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 67 TSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKR 126
Query: 436 XXXXXXXXXXXXXXXXQARGHIIERFPSFP 525
ARGH IE P P
Sbjct: 127 HAIVSAIAATAVPALVMARGHKIENVPEMP 156
Score = 69.7 bits (163), Expect = 1e-12
Identities = 34/66 (51%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Frame = +2
Query: 65 MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 238
M+ + ARPLV++ + + T Q + LP V AP+RPD+VN VH +S NSRQPY VS
Sbjct: 1 MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60
Query: 239 KEAGHQ 256
K+AGHQ
Sbjct: 61 KKAGHQ 66
Score = 35.9 bits (79), Expect = 0.022
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +3
Query: 510 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILK 617
+PE+PLVV+D + + KT A+ L+++ A+ D K
Sbjct: 152 VPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEK 187
>At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin;
glycine-rich protein 18 (GRP18) PMID:11431566;
Length = 228
Score = 31.5 bits (68), Expect = 0.47
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +1
Query: 214 LEAALLREQGGWSPTSAESWGTGRAVARIPRVRGGGTHRSGQ---GAFGNMCRGGRMFAP 384
+ AL+R + G PT AE + + + ++P G G G+ G FGN GG F
Sbjct: 76 MAVALIRRRMGAKPT-AEGTSSAQPLLKLPVYGGYGGFWGGKKFSGTFGNKPGGGNPFGD 134
Query: 385 TKPW 396
W
Sbjct: 135 ISKW 138
>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 497
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/70 (30%), Positives = 35/70 (50%)
Frame = +2
Query: 89 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQPVLN 268
LV +++ SE+++ PLPF K+P +PD++ H + NS+ C+ + V
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICIYALGRMRSVWG 408
Query: 269 HGVLDVLSPE 298
LD PE
Sbjct: 409 EDALD-FKPE 417
>At1g26400.1 68414.m03220 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 527
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -2
Query: 568 CLVLLISWTLSATTKGSSGIFQ*CV 494
CLVLL+S +A TK SGIF C+
Sbjct: 9 CLVLLVSILRAAVTKPDSGIFTGCL 33
>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 844
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 379 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQH 260
R++ H + +H D + E+HHH H R+H ++H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775
>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 843
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 379 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQH 260
R++ H + +H D + E+HHH H R+H ++H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775
>At3g10310.1 68416.m01237 kinesin motor protein-related similar to
carboxy-terminal kinesin 2 GB:P79955 [Xenopus laevis]
Length = 897
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -3
Query: 516 RESFNNVSSSLN-ERWDAASSNGCRQGRSPLSEVDATVP-TPPGLR 385
+E N+ +L E W+ S NG ++ +SP S AT TPP LR
Sbjct: 645 KEQIENLKRALGTEEWNNVS-NGSKEIKSPFSRPIATTERTPPRLR 689
>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 989
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 140 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 235
P+PF K+P +PD++ H + NSR +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 140 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 235
P+PF K+P +PD++ H + NS+ +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887
>At3g50110.1 68416.m05478 phosphatase-related similar to PTEN1
GI:5566292 from [Drosophila melanogaster]; contains
prosite evidence: PS00383: Tyrosine specific protein
phosphatases active site
Length = 632
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 525 REARESFNNVSSSLNERWDAASSNGCRQGRSPLSEVDATVPTPPG 391
REA E + +S+ + D G PLS+ D VP PPG
Sbjct: 42 REAHEDSISTEASV-AKVDDTQMPASSTGSEPLSKTDDIVPCPPG 85
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -2
Query: 367 HHDTCYRRHPDRTYEYHHHGHAEF 296
HH Y H Y Y +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145
>At3g12430.1 68416.m01548 expressed protein ; expression supported
by MPSS
Length = 238
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 143 GAWLHPAPSHSSLNTPTLKVGLPID--SFRYFSEAIPLKY 30
G W+H SH+ ++ L VG+ + Y+S + P++Y
Sbjct: 38 GQWIHDVLSHNRFSSHPLVVGVGVQWTPSSYYSASSPVRY 77
>At5g42390.1 68418.m05161 metalloendopeptidase identical to
chloroplast processing enzyme metalloendopeptidase
[Arabidopsis thaliana] gi|2827039|gb|AAC39482
Length = 1265
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +2
Query: 401 VGTVASTSDSGERPWRQPLLLAASQRSFRLEDTLLKDS 514
+GTV ++ DS + P +P+L + + LKD+
Sbjct: 968 LGTVKASHDSAKPPGSEPILFRQPTAGLQFQQVFLKDT 1005
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 27.5 bits (58), Expect = 7.7
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -2
Query: 367 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 284
HHD + H D +++ HH H H
Sbjct: 311 HHDHDHDHHHDHNHDHDHHHHDGHDHHH 338
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,835,662
Number of Sequences: 28952
Number of extensions: 258595
Number of successful extensions: 906
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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