Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021709
         (743 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6FBF0 Cluster: Putative O-antigen ligase; n=1; Moritel...    35   2.4  
UniRef50_Q893L6 Cluster: Membrane spanning protein; n=1; Clostri...    33   5.6  

>UniRef50_A6FBF0 Cluster: Putative O-antigen ligase; n=1; Moritella
           sp. PE36|Rep: Putative O-antigen ligase - Moritella sp.
           PE36
          Length = 386

 Score = 34.7 bits (76), Expect = 2.4
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -1

Query: 698 IIKLCFEKILRSYHHTAYVKICNNTTV--DTYLKYWYLRVKKYDWLLNFIAH 549
           ++ L F +IL S +H  ++    +T V   TY    YL++ + DW LN I H
Sbjct: 92  LLLLTFPRILLSKYHLKWLVALGSTVVLSSTYYLSEYLQIHRVDWPLNAIPH 143


>UniRef50_Q893L6 Cluster: Membrane spanning protein; n=1;
           Clostridium tetani|Rep: Membrane spanning protein -
           Clostridium tetani
          Length = 243

 Score = 33.5 bits (73), Expect = 5.6
 Identities = 16/51 (31%), Positives = 31/51 (60%)
 Frame = -1

Query: 194 ILFLISKKYLSIYISRSLIDDLLCLLEFSIINLRNYLF*VLIWFCYLPLFI 42
           I F+   ++++I I+ S+ID     ++F I+N++ Y + +L  F  +PL I
Sbjct: 107 IAFVYVLQFITILITGSIIDHEPLTMDFLILNIKIYCYSLLFQFAIVPLAI 157


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 597,019,254
Number of Sequences: 1657284
Number of extensions: 10938357
Number of successful extensions: 20755
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20752
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60911752460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)