Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021709
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    27   3.7  
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    26   6.5  
SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|c...    25   8.6  

>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = +1

Query: 91  FRKLIIENSNKHNKSSIRERDIYILRYFLLIK 186
           FR +I  N++KH+ S   +R I++ +Y+L ++
Sbjct: 33  FRVIIKSNAHKHDPSD--KRQIWLEKYYLFVR 62


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 121 KHNKSSIRERDIYILRYFLLIKNKIHSIVNF 213
           K + SS      Y  +  LL+KNK+H+I  F
Sbjct: 377 KFSHSSRSHDKSYTKKLLLLLKNKVHTIKEF 407


>SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 291

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 447 CRYCEQNLHFIVHNFTIVDTTVMCLSVINTQC 352
           C +   ++HFI H+  +VD    C++VI   C
Sbjct: 130 CWHVRASVHFINHDGNLVDAA--CIAVIAALC 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,699,333
Number of Sequences: 5004
Number of extensions: 52819
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)