Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021709
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1163 + 9258427-9258451,9258581-9258681,9258890-9258967,925...    29   5.2  
01_06_1061 - 34169469-34169624,34170837-34170938,34171029-341711...    28   9.0  

>01_01_1163 +
           9258427-9258451,9258581-9258681,9258890-9258967,
           9259625-9259765,9260263-9260329,9261039-9261193,
           9261285-9261386,9262022-9262141,9262688-9262855
          Length = 318

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 620 LLYYYRFLHRQCGGN-FEVFSQSTI 691
           LLYY+R   RQ G N + VFS  TI
Sbjct: 98  LLYYFRVFERQIGSNKYSVFSLFTI 122


>01_06_1061 -
           34169469-34169624,34170837-34170938,34171029-34171180,
           34172087-34172153,34172239-34172419,34172655-34172778,
           34174775-34174871,34175929-34176331,34176729-34176888,
           34177412-34177486,34177714-34177892,34178224-34178303,
           34178561-34179322
          Length = 845

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 563 LITNRISSPLSTSILSKCQLLYYYRFLHRQCGGN-FEVF 676
           LIT+  +   +  ++    LLYY+R   RQ G N + VF
Sbjct: 651 LITSLFAFSSTPELIFGAALLYYFRVFERQIGSNKYSVF 689


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,636,217
Number of Sequences: 37544
Number of extensions: 247582
Number of successful extensions: 389
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)