Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021707
         (594 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9V3C0 Cluster: ATP-dependent RNA helicase abstrakt; n=...    89   7e-17
UniRef50_UPI00015B4D1B Cluster: PREDICTED: similar to DEAD box A...    82   8e-15
UniRef50_Q803D3 Cluster: DEAD (Asp-Glu-Ala-Asp) box polypeptide ...    62   1e-08
UniRef50_Q5C3F1 Cluster: SJCHGC05209 protein; n=1; Schistosoma j...    48   1e-04
UniRef50_Q9N5K1 Cluster: Putative uncharacterized protein; n=2; ...    39   0.10 
UniRef50_A2EA65 Cluster: Putative uncharacterized protein; n=1; ...    37   0.41 
UniRef50_Q9LU46 Cluster: DEAD-box ATP-dependent RNA helicase 35;...    37   0.41 
UniRef50_Q0E3X4 Cluster: DEAD-box ATP-dependent RNA helicase 35A...    36   0.54 
UniRef50_UPI00001FD97D Cluster: PREDICTED: hypothetical protein;...    33   3.8  
UniRef50_A6M2G0 Cluster: Methyl-accepting chemotaxis sensory tra...    32   8.8  
UniRef50_A7RGX3 Cluster: Predicted protein; n=3; Eukaryota|Rep: ...    32   8.8  

>UniRef50_Q9V3C0 Cluster: ATP-dependent RNA helicase abstrakt; n=7;
           Eukaryota|Rep: ATP-dependent RNA helicase abstrakt -
           Drosophila melanogaster (Fruit fly)
          Length = 619

 Score = 89.0 bits (211), Expect = 7e-17
 Identities = 45/85 (52%), Positives = 56/85 (65%), Gaps = 4/85 (4%)
 Frame = +3

Query: 270 KSSSENDHDDETSQ----EEWGRRYNVSLLDQHXXXXXXXXXXXXXXXXXXXXEEEHILE 437
           KSSSEN+++D++      E WGR+YN+SLLDQH                    EEE I+E
Sbjct: 55  KSSSENENEDDSQGAHDVETWGRKYNISLLDQHTELKKIAEAKKLSAVEKQLREEEKIME 114

Query: 438 SVAQSKALMGVAELAKGIQYEEPIR 512
           S+AQ KALMGVAELAKGIQYE+PI+
Sbjct: 115 SIAQQKALMGVAELAKGIQYEQPIK 139



 Score = 36.7 bits (81), Expect = 0.41
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = +2

Query: 509 KTSWRPPRCILDLPETRHEMIRNKLRIL 592
           KT+W+PPR I ++ E   E +R++LRIL
Sbjct: 139 KTAWKPPRYIREMSEEEREAVRHELRIL 166



 Score = 35.5 bits (78), Expect = 0.95
 Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +1

Query: 121 IKRYRREEKSDSDEDVDN--YEPYVPI 195
           +KRYRR  KS  + D+DN  Y PYVP+
Sbjct: 4   VKRYRRSSKSSEEGDLDNEDYVPYVPV 30


>UniRef50_UPI00015B4D1B Cluster: PREDICTED: similar to DEAD box
           ATP-dependent RNA helicase; n=1; Nasonia
           vitripennis|Rep: PREDICTED: similar to DEAD box
           ATP-dependent RNA helicase - Nasonia vitripennis
          Length = 594

 Score = 82.2 bits (194), Expect = 8e-15
 Identities = 43/83 (51%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
 Frame = +3

Query: 270 KSSSENDHD--DETSQEEWGRRYNVSLLDQHXXXXXXXXXXXXXXXXXXXXEEEHILESV 443
           KSSSEN+ D  D+   + WGR+ N+SLLDQH                    EEE ILESV
Sbjct: 59  KSSSENERDEGDDEDIQVWGRKSNISLLDQHTELKKLAEAKKESAMEKQLKEEEKILESV 118

Query: 444 AQSKALMGVAELAKGIQYEEPIR 512
           A++KALMGVAELAKGI+Y +PI+
Sbjct: 119 AENKALMGVAELAKGIEYTDPIK 141



 Score = 38.3 bits (85), Expect = 0.13
 Identities = 17/27 (62%), Positives = 17/27 (62%)
 Frame = +2

Query: 509 KTSWRPPRCILDLPETRHEMIRNKLRI 589
           KTSWRPPR IL     RHE IR K  I
Sbjct: 141 KTSWRPPRTILTKDNVRHERIRRKFGI 167



 Score = 34.3 bits (75), Expect = 2.2
 Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 3/29 (10%)
 Frame = +1

Query: 118 PIKRYRR-EEKSDSD--EDVDNYEPYVPI 195
           P+KRYRR +EK + D  E  D+Y PYVP+
Sbjct: 4   PVKRYRRDDEKEEKDELESDDDYVPYVPV 32


>UniRef50_Q803D3 Cluster: DEAD (Asp-Glu-Ala-Asp) box polypeptide 41;
           n=5; Euteleostomi|Rep: DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 41 - Danio rerio (Zebrafish) (Brachydanio
           rerio)
          Length = 306

 Score = 61.7 bits (143), Expect = 1e-08
 Identities = 33/81 (40%), Positives = 43/81 (53%)
 Frame = +3

Query: 270 KSSSENDHDDETSQEEWGRRYNVSLLDQHXXXXXXXXXXXXXXXXXXXXEEEHILESVAQ 449
           +   ++  + +   E  G R NVSLLDQH                    EEE ILESVA+
Sbjct: 54  EEQKDSGGEQKDEDEGLGPRSNVSLLDQHQHLKEKADARKESAKEKQLKEEEKILESVAE 113

Query: 450 SKALMGVAELAKGIQYEEPIR 512
            +ALM V E+AKGI YE+PI+
Sbjct: 114 GRALMSVKEMAKGITYEDPIK 134



 Score = 37.5 bits (83), Expect = 0.23
 Identities = 16/28 (57%), Positives = 17/28 (60%)
 Frame = +2

Query: 509 KTSWRPPRCILDLPETRHEMIRNKLRIL 592
           KTSW  PR IL +P  RHE  R K  IL
Sbjct: 134 KTSWNAPRYILSMPAVRHERARKKYHIL 161


>UniRef50_Q5C3F1 Cluster: SJCHGC05209 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC05209 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 151

 Score = 48.4 bits (110), Expect = 1e-04
 Identities = 23/32 (71%), Positives = 27/32 (84%)
 Frame = +3

Query: 417 EEEHILESVAQSKALMGVAELAKGIQYEEPIR 512
           EE  ILESVA+  AL GVAELAKGIQY++PI+
Sbjct: 112 EEAKILESVAEKTALKGVAELAKGIQYDKPIQ 143


>UniRef50_Q9N5K1 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 630

 Score = 38.7 bits (86), Expect = 0.10
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = +3

Query: 417 EEEHILESVAQSKALMGVAELAKGIQYEEPI 509
           EEE +L+ V +   L+ VAEL KG +YEEPI
Sbjct: 120 EEEELLDKVTRGGGLLAVAELTKGEKYEEPI 150


>UniRef50_A2EA65 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 565

 Score = 36.7 bits (81), Expect = 0.41
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +1

Query: 97  DDPAPPPPIKRYRREEKSDSDEDVDNYEP 183
           D+PAPPPP K+ ++   SD DED +  +P
Sbjct: 494 DEPAPPPPKKQQKKPMFSDDDEDEEEIKP 522


>UniRef50_Q9LU46 Cluster: DEAD-box ATP-dependent RNA helicase 35;
           n=2; Magnoliophyta|Rep: DEAD-box ATP-dependent RNA
           helicase 35 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 591

 Score = 36.7 bits (81), Expect = 0.41
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = +3

Query: 417 EEEHILESVAQSKALMGVAELAKGIQYEEPI 509
           +E+ ++E ++  K LM V ELAKGI Y EP+
Sbjct: 77  QEKEMMEHLSDKKTLMSVRELAKGITYTEPL 107


>UniRef50_Q0E3X4 Cluster: DEAD-box ATP-dependent RNA helicase 35A;
           n=50; Eukaryota|Rep: DEAD-box ATP-dependent RNA helicase
           35A - Oryza sativa subsp. japonica (Rice)
          Length = 627

 Score = 36.3 bits (80), Expect = 0.54
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = +3

Query: 417 EEEHILESVAQSKALMGVAELAKGIQYEEPIR 512
           +E+ ++E ++  K LM V ELAKGI Y +P++
Sbjct: 113 QEKEMIEHLSDRKTLMSVRELAKGITYSDPLK 144


>UniRef50_UPI00001FD97D Cluster: PREDICTED: hypothetical protein;
           n=1; Homo sapiens|Rep: PREDICTED: hypothetical protein -
           Homo sapiens
          Length = 98

 Score = 33.5 bits (73), Expect = 3.8
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 444 LHSRVYVPLLLPVFRLQTELGPRPVSSTHCAGPAMKHCNVC 322
           L SRV+VP  +    +Q +L   P     C G  + HCN+C
Sbjct: 34  LFSRVFVPFYVSTSNIQVDLTLSP--KLECTGMILAHCNLC 72


>UniRef50_A6M2G0 Cluster: Methyl-accepting chemotaxis sensory
           transducer precursor; n=1; Clostridium beijerinckii
           NCIMB 8052|Rep: Methyl-accepting chemotaxis sensory
           transducer precursor - Clostridium beijerinckii NCIMB
           8052
          Length = 582

 Score = 32.3 bits (70), Expect = 8.8
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +1

Query: 271 KALAKTTMTMKHLKRNGADVTMFHCWTSTVS*RDWPRPELCLQPKNRQEKRNIYSRV 441
           +AL + T  M  LK+N +D +     T  +S  D  R ELC   KN   K  I S++
Sbjct: 113 EALEELTSKMDLLKQNTSDKSAIDQLTKNLSIADTYRKELCNSIKNNDPKSTITSKL 169


>UniRef50_A7RGX3 Cluster: Predicted protein; n=3; Eukaryota|Rep:
           Predicted protein - Nematostella vectensis
          Length = 487

 Score = 32.3 bits (70), Expect = 8.8
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +2

Query: 515 SWRPPRCILDLPETRHEMIRNKLRIL 592
           SW PPR IL +P+ + E IR K  IL
Sbjct: 11  SWTPPRYILHMPKEKIERIRKKWHIL 36


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 528,992,146
Number of Sequences: 1657284
Number of extensions: 9645184
Number of successful extensions: 30794
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 28795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30596
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41488046300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)