Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021707
(594 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1255 + 28780181-28781172,28782065-28782932 38 0.006
02_01_0381 - 2764331-2764342,2768966-2769907 36 0.018
07_01_1120 - 10338265-10338624,10338739-10338873,10339411-10340451 31 0.92
09_03_0130 - 12609417-12610462,12610786-12611040,12611139-126112... 25 1.1
01_06_1655 + 38940790-38940864,38941245-38942057,38942149-389422... 30 1.2
11_06_0143 + 20589574-20589684,20590256-20590873,20590943-205910... 30 1.6
10_08_0203 + 15776521-15776656,15776662-15776819 30 1.6
05_07_0220 + 28482589-28483752 29 2.1
06_01_1036 + 8134132-8134539,8134885-8134956,8134969-8135088,813... 28 4.9
04_04_1560 - 34432491-34432837,34433097-34433292 28 4.9
04_01_0279 + 3743025-3745169 28 4.9
04_01_0213 - 2692253-2694562 28 4.9
09_01_0016 - 376742-376883,377973-378964 28 6.5
03_05_1153 + 30787574-30787608,30787982-30788089,30788651-307886... 25 7.6
10_08_0299 - 16607152-16607322,16607465-16607785,16607870-166081... 27 8.5
06_03_0082 + 16363742-16364632 27 8.5
>06_03_1255 + 28780181-28781172,28782065-28782932
Length = 619
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +3
Query: 417 EEEHILESVAQSKALMGVAELAKGIQYEEPI 509
+E ++E ++ KALM V E+AKGI Y EPI
Sbjct: 104 QEREMIEHLSDRKALMPVGEIAKGISYSEPI 134
>02_01_0381 - 2764331-2764342,2768966-2769907
Length = 317
Score = 36.3 bits (80), Expect = 0.018
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +3
Query: 417 EEEHILESVAQSKALMGVAELAKGIQYEEPIR 512
+E+ ++E ++ K LM V ELAKGI Y +P++
Sbjct: 113 QEKEMIEHLSDRKTLMSVRELAKGITYSDPLK 144
>07_01_1120 - 10338265-10338624,10338739-10338873,10339411-10340451
Length = 511
Score = 30.7 bits (66), Expect = 0.92
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +1
Query: 88 DVKDDPAPPPPIKRYRREEKSDSDEDVDNYEP 183
D D P PPPP+ R R E S E EP
Sbjct: 2 DATDPPPPPPPLTRKRGREARKSKEAAPPREP 33
>09_03_0130 -
12609417-12610462,12610786-12611040,12611139-12611253,
12611376-12611428,12611854-12612114,12612252-12612302,
12612412-12612660,12612779-12613007,12613292-12613666
Length = 877
Score = 24.6 bits (51), Expect(2) = 1.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 103 PAPPPPIKRYRREEKSDSDEDVDNYE 180
P PPPP++R +S VD E
Sbjct: 22 PPPPPPLRRLLTATRSGGSRWVDGSE 47
Score = 24.2 bits (50), Expect(2) = 1.1
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = +1
Query: 85 SDVKDDPAPPPP 120
S ++++PAPPPP
Sbjct: 6 SGIQEEPAPPPP 17
>01_06_1655 +
38940790-38940864,38941245-38942057,38942149-38942268,
38942883-38943566
Length = 563
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 103 PAPPPPIKRYRREEKSDSDED 165
PAPPPP+ R+ + D D+D
Sbjct: 121 PAPPPPVSARERQRRRDVDDD 141
>11_06_0143 +
20589574-20589684,20590256-20590873,20590943-20591010,
20591159-20591234,20591311-20591372,20591452-20591603,
20591889-20592052,20592129-20592317,20592417-20592538,
20592620-20592827,20593238-20593291,20593457-20593626,
20594265-20594355,20595405-20595529,20596372-20596444,
20596822-20596914,20597482-20597728,20598305-20598364,
20598461-20598590,20599008-20599014
Length = 939
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 79 KMSDVKDDPAPPPPIKRYRREEKSDSDED 165
K+SD +D P P K +EE+ D D+D
Sbjct: 81 KVSDELEDDMKPLPAKEVHKEEEDDDDDD 109
>10_08_0203 + 15776521-15776656,15776662-15776819
Length = 97
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 100 DPAPPPPIKRYRREEKSDSDEDVDN 174
DPAPPPP++ RE++ + D D+
Sbjct: 14 DPAPPPPLRPALREDRLVASNDEDD 38
>05_07_0220 + 28482589-28483752
Length = 387
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = -1
Query: 567 ISCLVSGRSRMQRGGRHDVLLALHIVYL*PTPPLPSGLCSALHSRVYVPLL 415
IS +G ++ +GG+H V +++ + P PP+P C V++PLL
Sbjct: 204 ISIRSTGYQKLNQGGKHRVSKPVNVGSVRPNPPIPPLCC------VWLPLL 248
>06_01_1036 +
8134132-8134539,8134885-8134956,8134969-8135088,
8135179-8135256,8135442-8135697,8136427-8136515,
8137229-8137376,8137460-8137899,8138048-8138562,
8138791-8139061,8139231-8139492,8139583-8139938
Length = 1004
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 109 PPPPIKRYRREEKSDSDEDVDNYE 180
PPP +R RR S D D+D E
Sbjct: 914 PPPSRRRARRSPSSSDDSDIDGQE 937
>04_04_1560 - 34432491-34432837,34433097-34433292
Length = 180
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = -1
Query: 480 PTPPLPSGLCSALHS--RVYVPLLLPVF 403
PTPP PSG SAL + +LLPVF
Sbjct: 149 PTPPHPSGAASALGAGGLAVAAMLLPVF 176
>04_01_0279 + 3743025-3745169
Length = 714
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 536 CNVVDAMMSYWLFILYTFSQLRHSHQGFALR 444
C VV+ +S ILYT + + H+ GFA+R
Sbjct: 240 CRVVEMELSLMYDILYTKAAVMHTWFGFAIR 270
>04_01_0213 - 2692253-2694562
Length = 769
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = -2
Query: 533 NVVDAMMSYWLFILYTFSQLRHSHQGFALRYTLEYMFLFSCLF 405
+VVD +S ILYT + + H+ G+A+R++ F+ S +F
Sbjct: 254 DVVDMELSLMYDILYTKAAMVHTWGGYAIRFSSH--FITSAMF 294
>09_01_0016 - 376742-376883,377973-378964
Length = 377
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 103 PAPPP-PIKRYRREEKSDSDEDVDNYEPYVP 192
P PPP + +++ S+SD D D+ EP +P
Sbjct: 93 PLPPPLQANKNHQDQDSESDSDSDDDEPPLP 123
>03_05_1153 +
30787574-30787608,30787982-30788089,30788651-30788689,
30789181-30789184,30789496-30789580,30789609-30790321
Length = 327
Score = 25.0 bits (52), Expect(2) = 7.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 94 KDDPAPPPPIKRYRREEKSDSDEDVDNYEPYVP 192
K++P PPPP + EEK + V EP P
Sbjct: 188 KEEPQPPPP----KEEEKPEPPPAVIIVEPPAP 216
Score = 21.0 bits (42), Expect(2) = 7.6
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +1
Query: 76 LKMSDVKDDPAPPPP 120
+K ++ D P PPPP
Sbjct: 162 IKEIEIVDLPPPPPP 176
>10_08_0299 -
16607152-16607322,16607465-16607785,16607870-16608121,
16608298-16608435,16608544-16608651,16608814-16609014,
16609109-16609233,16609252-16609321,16609919-16610455
Length = 640
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 103 PAPPPPIKRYRREEKSDSDEDVDN 174
P PPP+K E++ D D+D D+
Sbjct: 128 PPRPPPVKDDDEEDEDDDDDDGDD 151
>06_03_0082 + 16363742-16364632
Length = 296
Score = 27.5 bits (58), Expect = 8.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 437 ECSAEQSPDGSGGVG 481
EC +E+ PDG GG+G
Sbjct: 216 ECDSEELPDGGGGLG 230
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,144,420
Number of Sequences: 37544
Number of extensions: 311816
Number of successful extensions: 1351
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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