Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021707
         (594 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48237| Best HMM Match : zf-P11 (HMM E-Value=6.5)                    31   0.53 
SB_14616| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_19851| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_1274| Best HMM Match : PARG_cat (HMM E-Value=2.5e-14)               29   2.1  
SB_51078| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_37429| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_38249| Best HMM Match : HA2 (HMM E-Value=1.6e-26)                   27   8.6  

>SB_48237| Best HMM Match : zf-P11 (HMM E-Value=6.5)
          Length = 173

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +1

Query: 85  SDVKDDPAPPPP---IKRYRREEKSDSDEDVDN 174
           S +   PAPPPP   I R R++E  D DED D+
Sbjct: 38  SQLDGAPAPPPPTPTIVRARKKEYEDEDEDGDD 70


>SB_14616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1307

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +1

Query: 76  LKMSDVKDDPAPPPP---IKRYRREEKSDSDEDVDN 174
           +  S +   P PPPP   I R R+EE+++ +ED D+
Sbjct: 490 INASQLDGPPVPPPPTPTIIRARKEEENEEEEDDDS 525


>SB_19851| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 97  DDPAPPPPIKRYRREEKSDSDED 165
           +DP+ PPPI+R   E+ +D D D
Sbjct: 88  EDPSLPPPIERPDSEDDNDDDND 110


>SB_1274| Best HMM Match : PARG_cat (HMM E-Value=2.5e-14)
          Length = 334

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +3

Query: 291 HDDETSQEEWGRRYN-VSLLDQH 356
           HDD++ ++ WGRRY+ V  +D H
Sbjct: 144 HDDKSIRDSWGRRYSQVVAIDAH 166


>SB_51078| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 8/28 (28%), Positives = 20/28 (71%)
 Frame = +1

Query: 82  MSDVKDDPAPPPPIKRYRREEKSDSDED 165
           M  +++DP  PPP+++  +E++ + +E+
Sbjct: 30  MMSLQEDPIQPPPLEKDSKEKEGEEEEE 57


>SB_37429| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +1

Query: 94  KDDPAPPPPIKRYRREEKSDS--DEDVDNYEPYV 189
           +DDP PPPP+     + ++ +  D++ +  E Y+
Sbjct: 47  EDDPTPPPPVHMQHEQAEAPNLLDDEQEEDEEYI 80


>SB_38249| Best HMM Match : HA2 (HMM E-Value=1.6e-26)
          Length = 355

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 109 PPPPIKRYRREEKSDSDEDVDNY 177
           PP P K+ +REE  + DE + NY
Sbjct: 15  PPLPEKKKKREENDEDDEALLNY 37


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,555,218
Number of Sequences: 59808
Number of extensions: 306205
Number of successful extensions: 967
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)