Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021707
(594 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical ... 39 0.003
U88167-3|AAB42224.2| 363|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z29443-10|CAA82578.2| 315|Caenorhabditis elegans Hypothetical p... 29 2.5
AF036688-8|AAB88314.2| 482|Caenorhabditis elegans Hypothetical ... 29 2.5
AB121091-1|BAD14918.1| 315|Caenorhabditis elegans T-box transcr... 29 2.5
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein. 29 3.3
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei... 29 3.3
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :... 29 3.3
AC084153-1|AAK84596.1| 385|Caenorhabditis elegans Hypothetical ... 28 5.8
AC006762-4|AAU20835.1| 484|Caenorhabditis elegans Hypothetical ... 28 5.8
AC006762-3|AAU20834.1| 614|Caenorhabditis elegans Hypothetical ... 28 5.8
AC006762-2|AAF60558.2| 607|Caenorhabditis elegans Hypothetical ... 28 5.8
AC006762-1|AAU87813.1| 514|Caenorhabditis elegans Hypothetical ... 28 5.8
Z81089-5|CAD89731.2| 933|Caenorhabditis elegans Hypothetical pr... 27 7.6
>AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical
protein H27M09.1 protein.
Length = 630
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = +3
Query: 417 EEEHILESVAQSKALMGVAELAKGIQYEEPI 509
EEE +L+ V + L+ VAEL KG +YEEPI
Sbjct: 120 EEEELLDKVTRGGGLLAVAELTKGEKYEEPI 150
>U88167-3|AAB42224.2| 363|Caenorhabditis elegans Hypothetical
protein D2092.4 protein.
Length = 363
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 79 KMSDVKDDPAPPPPIKRYRREEKSDSDEDVD 171
K S VK+ PAPPP + ++ +S +DVD
Sbjct: 51 KKSAVKEAPAPPPKALSSKHKDDDNSIDDVD 81
>Z29443-10|CAA82578.2| 315|Caenorhabditis elegans Hypothetical
protein T07C4.2 protein.
Length = 315
Score = 29.1 bits (62), Expect = 2.5
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +1
Query: 103 PAPPPPIKRYRREEKSDSDEDVD 171
P PPP +K ++EE+ D +++++
Sbjct: 291 PTPPPSLKNVKKEEQEDIEQEIN 313
>AF036688-8|AAB88314.2| 482|Caenorhabditis elegans Hypothetical
protein C24D10.1 protein.
Length = 482
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 79 KMSDVKDDPAPPPPIKRYRREEKSDSDEDVDNYEPYVPI 195
KM +D AP P + RE+ SD + V++ P PI
Sbjct: 67 KMKPKRDSKAPSPALSPGPREQLSDQKKTVEDDPPPAPI 105
>AB121091-1|BAD14918.1| 315|Caenorhabditis elegans T-box
transcription factor TBX-8 protein.
Length = 315
Score = 29.1 bits (62), Expect = 2.5
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +1
Query: 103 PAPPPPIKRYRREEKSDSDEDVD 171
P PPP +K ++EE+ D +++++
Sbjct: 291 PTPPPSLKNVKKEEQEDIEQEIN 313
>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
Length = 1475
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 106 APPPPIKRYRREEKSDSDEDVDNYEP 183
APPP +R SD DED D +P
Sbjct: 1147 APPPKYSCKKRSRSSDEDEDSDPNQP 1172
>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
protein.
Length = 1475
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 106 APPPPIKRYRREEKSDSDEDVDNYEP 183
APPP +R SD DED D +P
Sbjct: 1147 APPPKYSCKKRSRSSDEDEDSDPNQP 1172
>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
animals transformedinto males protein 2, isoform a
protein.
Length = 1475
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 106 APPPPIKRYRREEKSDSDEDVDNYEP 183
APPP +R SD DED D +P
Sbjct: 1147 APPPKYSCKKRSRSSDEDEDSDPNQP 1172
>AC084153-1|AAK84596.1| 385|Caenorhabditis elegans Hypothetical
protein Y22D7AL.7 protein.
Length = 385
Score = 27.9 bits (59), Expect = 5.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 103 PAPPPPIKRYRREEKSDSDEDVD 171
P PPPP+++ + D D+D D
Sbjct: 340 PPPPPPLQKINNDGVDDDDDDDD 362
>AC006762-4|AAU20835.1| 484|Caenorhabditis elegans Hypothetical
protein Y42G9A.4c protein.
Length = 484
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 390 ELGPRPVSSTHCAGPAMKH 334
EL PVSST C+ PA KH
Sbjct: 465 ELFQTPVSSTQCSTPASKH 483
>AC006762-3|AAU20834.1| 614|Caenorhabditis elegans Hypothetical
protein Y42G9A.4b protein.
Length = 614
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 390 ELGPRPVSSTHCAGPAMKH 334
EL PVSST C+ PA KH
Sbjct: 595 ELFQTPVSSTQCSTPASKH 613
>AC006762-2|AAF60558.2| 607|Caenorhabditis elegans Hypothetical
protein Y42G9A.4a protein.
Length = 607
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 390 ELGPRPVSSTHCAGPAMKH 334
EL PVSST C+ PA KH
Sbjct: 588 ELFQTPVSSTQCSTPASKH 606
>AC006762-1|AAU87813.1| 514|Caenorhabditis elegans Hypothetical
protein Y42G9A.4d protein.
Length = 514
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 390 ELGPRPVSSTHCAGPAMKH 334
EL PVSST C+ PA KH
Sbjct: 495 ELFQTPVSSTQCSTPASKH 513
>Z81089-5|CAD89731.2| 933|Caenorhabditis elegans Hypothetical
protein F53H4.6 protein.
Length = 933
Score = 27.5 bits (58), Expect = 7.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 94 KDDPAPPPPIKRYRREEKSDSDEDV 168
+ D P PPI++ ++ DSD+DV
Sbjct: 104 RPDALPDPPIEKRHKQTTVDSDDDV 128
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,317,522
Number of Sequences: 27780
Number of extensions: 237475
Number of successful extensions: 917
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -