Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021707
         (594 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    27   0.18 
AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor p...    26   0.24 
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    25   0.74 
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    25   0.74 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   1.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.9  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   3.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   9.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   9.1  

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 103 PAPPPPIKRYRREEKSDSDEDVDNYEPYVP 192
           P P PP  R RRE +S++ E  +N   Y+P
Sbjct: 79  PQPRPPHPRLRREAESEA-EPGNNRPVYIP 107



 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 103 PAPPPPIKRYRREEKSDSDEDVDNYEPYVP 192
           P P PP  R RRE +  + E  +N   Y+P
Sbjct: 51  PQPRPPHPRLRREAEPKA-EPGNNRPIYIP 79



 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 103 PAPPPPIKRYRREEKSDSDEDVDNYEP 183
           P P PP  R RRE +++   +   Y P
Sbjct: 107 PQPRPPHPRLRREPEAEPGNNRPVYIP 133



 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 103 PAPPPPIKRYRREEKSDSDEDVDNYEP 183
           P P PP  R RRE +++   +   Y P
Sbjct: 133 PQPRPPHPRLRREPEAEPGNNRPVYIP 159


>AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor
           protein.
          Length = 199

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 103 PAPPPPIKRYRREEKSDSDEDVDNYEPYVP 192
           P P PP  R RRE K ++ E  +N   Y+P
Sbjct: 134 PQPRPPHPRLRREAKPEA-EPGNNRPVYIP 162



 Score = 24.6 bits (51), Expect = 0.74
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 103 PAPPPPIKRYRREEKSDSDEDVDNYEPYVP 192
           P P PP  R RRE + ++ E  +N   Y+P
Sbjct: 22  PQPRPPHPRLRREAEPEA-EPGNNRPVYIP 50



 Score = 24.6 bits (51), Expect = 0.74
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 103 PAPPPPIKRYRREEKSDSDEDVDNYEPYVP 192
           P P PP  R RRE + ++ E  +N   Y+P
Sbjct: 50  PQPRPPHPRLRREAEPEA-EPGNNRPVYIP 78



 Score = 24.6 bits (51), Expect = 0.74
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 103 PAPPPPIKRYRREEKSDSDEDVDNYEPYVP 192
           P P PP  R RRE + ++ E  +N   Y+P
Sbjct: 78  PQPRPPHPRLRREAEPEA-EPGNNRPVYIP 106



 Score = 24.6 bits (51), Expect = 0.74
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 103 PAPPPPIKRYRREEKSDSDEDVDNYEPYVP 192
           P P PP  R RRE + ++ E  +N   Y+P
Sbjct: 106 PQPRPPHPRLRREAEPEA-EPGNNRPVYIP 134



 Score = 24.6 bits (51), Expect = 0.74
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 103 PAPPPPIKRYRREEKSDSDEDVDNYEPYVP 192
           P P PP  R RRE + ++ E  +N   Y+P
Sbjct: 162 PQPRPPHPRLRREAEPEA-EPGNNRPVYIP 190


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 24.6 bits (51), Expect = 0.74
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 103 PAPPPPIKRYRREEKSDSDEDVDNYEPYVP 192
           P P PP  R RRE + ++ E  +N   Y+P
Sbjct: 50  PQPRPPHPRLRREAEPEA-EPGNNRPVYIP 78



 Score = 24.6 bits (51), Expect = 0.74
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 103 PAPPPPIKRYRREEKSDSDEDVDNYEPYVP 192
           P P PP  R RRE + ++ E  +N   Y+P
Sbjct: 190 PQPRPPHPRLRREAEPEA-EPGNNRPVYIP 218



 Score = 24.6 bits (51), Expect = 0.74
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 103 PAPPPPIKRYRREEKSDSDEDVDNYEPYVP 192
           P P PP  R RRE + ++ E  +N   Y+P
Sbjct: 218 PQPRPPHPRLRREAEPEA-EPGNNRPVYIP 246



 Score = 24.6 bits (51), Expect = 0.74
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 103 PAPPPPIKRYRREEKSDSDEDVDNYEPYVP 192
           P P PP  R RRE K ++ +  +N   Y+P
Sbjct: 246 PQPRPPHPRLRREAKPEA-KPGNNRPVYIP 274



 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 103 PAPPPPIKRYRREEKSDSD 159
           P P PP  R RRE + +++
Sbjct: 78  PQPRPPHPRLRREAELEAE 96



 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 103 PAPPPPIKRYRREEKSDSD 159
           P P PP  R RRE + +++
Sbjct: 134 PQPRPPHPRLRREAELEAE 152


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 24.6 bits (51), Expect = 0.74
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 103 PAPPPPIKRYRREEKSDSDEDVDNYEPYVP 192
           P P PP  R RRE + ++ E  +N   Y+P
Sbjct: 51  PQPRPPHPRLRREAEPEA-EPGNNRPVYIP 79



 Score = 24.6 bits (51), Expect = 0.74
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 103 PAPPPPIKRYRREEKSDSDEDVDNYEPYVP 192
           P P PP  R RRE + ++ E  +N   Y+P
Sbjct: 79  PQPRPPHPRLRREAEPEA-EPGNNRPVYIP 107



 Score = 24.6 bits (51), Expect = 0.74
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 103 PAPPPPIKRYRREEKSDSDEDVDNYEPYVP 192
           P P PP  R RRE + ++ E  +N   Y+P
Sbjct: 107 PQPRPPHPRLRREAEPEA-EPGNNRPVYIP 135


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 64  ITI*LKMSDVKDDPAPPPP 120
           + I L  SD    PAPPPP
Sbjct: 328 VNIVLGDSDTPPKPAPPPP 346


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +1

Query: 91   VKDDPAPPPPIKRYRREEKSDSDEDVDNYE 180
            V   P PPPP  R   +  S  ++  ++ E
Sbjct: 1853 VSGSPEPPPPPPRNHDQNNSSFNDSKESNE 1882


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 164 TWTTMNLTFPSKNVRN 211
           +W  +   FP+ N+RN
Sbjct: 23  SWNVIEYNFPNDNIRN 38


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 264 DTKSSSENDHDDETSQEEWGR 326
           D + + + D D+E  +EE GR
Sbjct: 273 DGEGADDRDDDEENEEEEDGR 293


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +1

Query: 97  DDPAPPPP 120
           D+P PPPP
Sbjct: 372 DEPLPPPP 379


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 440 CSAEQSPDGSGGVG*RYTI*RANKTS 517
           C  ++   GSG    R+TI +ANK S
Sbjct: 580 CKKDKKNAGSGS---RFTIYKANKAS 602


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 125 NGTGARKNQILTKTWTTMNLT 187
           N T +    ILT+ +T  NLT
Sbjct: 280 NRTNSDPRMILTEAYTEFNLT 300


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,961
Number of Sequences: 438
Number of extensions: 3277
Number of successful extensions: 26
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)