Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021707
         (594 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative           37   0.012
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA...    32   0.25 
At3g14180.1 68416.m01792 expressed protein similar to 6b-interac...    31   0.44 
At2g20330.1 68415.m02374 transducin family protein / WD-40 repea...    30   1.0  
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea...    29   2.3  
At3g11402.1 68416.m01388 DC1 domain-containing protein contains ...    28   5.4  
At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein family...    27   7.1  

>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 
          Length = 591

 Score = 36.7 bits (81), Expect = 0.012
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = +3

Query: 417 EEEHILESVAQSKALMGVAELAKGIQYEEPI 509
           +E+ ++E ++  K LM V ELAKGI Y EP+
Sbjct: 77  QEKEMMEHLSDKKTLMSVRELAKGITYTEPL 107


>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
           helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
          Length = 542

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 429 ILESVAQSKALMGVAELAKGIQYEEPI 509
           ++E ++  K LM V ELA+GI Y EP+
Sbjct: 32  MMEHLSDKKKLMSVGELARGITYTEPL 58


>At3g14180.1 68416.m01792 expressed protein similar to
           6b-interacting protein 1 (NtSIP1) [Nicotiana tabacum]
           GI:18149189
          Length = 443

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 82  MSDVKDDPAPPPPI-KRYRREEKSDSDED 165
           MSD   D  PPPP+ KR + EEK   D D
Sbjct: 316 MSDDSGDSLPPPPLSKRMKTEEKKKQDGD 344


>At2g20330.1 68415.m02374 transducin family protein / WD-40 repeat
           family protein similar to Transcriptional repressor
           rco-1 (SP:P78706) [Neurospora crassa]; similar to
           TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400)
          Length = 648

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +1

Query: 103 PAPPPPIKRYRREEKSDSDEDVDNYE 180
           P PPPP  R   +E SD D+D DN E
Sbjct: 136 PPPPPPAAR-DSDEDSDDDDDNDNEE 160



 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 85  SDVKDDPAPPPPIKRYRREEKSDSDEDVDN 174
           SD + D   PPP     R+   DSD+D DN
Sbjct: 127 SDDEGDMIGPPPPPPAARDSDEDSDDDDDN 156



 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 88  DVKDDPAPPPPIKRYRREEKSDSD 159
           DV   P PPP  KR + EE+ D +
Sbjct: 86  DVAMGPPPPPSSKRTQEEEEEDEE 109


>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
           family protein contains 8 WD-40 repeats (PF00400);
           similar to transducin homolog sazD - Homo sapiens,
           EMBL:U02609
          Length = 876

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 417 EEEHILESVAQSKALMGVAELAKGIQYE-EPIRHHGVHHVASSICRRRDT 563
           EEE IL       A++  AE  K I+   E  R H V  + S +CR+RD+
Sbjct: 667 EEEAILRGQELENAVLD-AEYTKAIRLAFELCRPHKVFELFSGLCRKRDS 715


>At3g11402.1 68416.m01388 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 708

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 4/29 (13%)
 Frame = +1

Query: 88  DVKDDPAPPPP--IKRY--RREEKSDSDE 162
           D+K+ P PPPP   KRY  +R +K D+ E
Sbjct: 2   DMKEVPPPPPPSGFKRYKKKRSKKMDNKE 30


>At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein family
           protein contains proline-rich domains,
           INTERPRO:IPR000694
          Length = 310

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 109 PPPPIKRYRREEKSDSDEDVDNYE 180
           PP    RY  +E+ D +ED +NYE
Sbjct: 164 PPNSNNRYVDDEEEDEEEDNNNYE 187


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,617,888
Number of Sequences: 28952
Number of extensions: 221687
Number of successful extensions: 815
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)