Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021706
         (673 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   2.3  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   2.3  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   2.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.0  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    22   4.0  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    22   4.0  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   6.9  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   6.9  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = +3

Query: 456 IEKIP--ELPLVVADKVQEITRPNRLSSS*GASRHGLISLRC 575
           + KIP  E P   +    E   P   SS  G++   ++SL C
Sbjct: 211 VPKIPPAEFPTTSSSSALESPNPASRSSCLGSNTSSMLSLNC 252


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -2

Query: 327 YVHHDTCYRRHPDRTYEYHHHGHADSGD 244
           Y++H    + +      Y+H+G+  SGD
Sbjct: 371 YINHQNYVQGYQGEHPNYNHYGYHYSGD 398


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -2

Query: 327 YVHHDTCYRRHPDRTYEYHHHGHADSGD 244
           Y++H    + +      Y+H+G+  SGD
Sbjct: 319 YINHQNYVQGYQGEHPNYNHYGYHYSGD 346


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 184  CVSKEAGHQTSAESW 228
            C  K+ GH+ S  SW
Sbjct: 1152 CEEKKPGHKPSTSSW 1166


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = +3

Query: 462 KIP--ELPLVVADKVQEITRPNRLSSS*GASRHGLISLRC 575
           KIP  E P   +    E   P   SS  G++   ++SL C
Sbjct: 2   KIPPAEFPTTSSSSALESPNPASRSSCLGSNTSSMLSLNC 41


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = +3

Query: 462 KIP--ELPLVVADKVQEITRPNRLSSS*GASRHGLISLRC 575
           KIP  E P   +    E   P   SS  G++   ++SL C
Sbjct: 2   KIPPAEFPTTSSSSALESPNPASRSSCLGSNTSSMLSLNC 41


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 85  HPAPSHSSLNTPTL 44
           HPA +HS+L +P +
Sbjct: 121 HPAAAHSALLSPAM 134


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 243 CRPNPRVRGGGTH 281
           C+PNP   GG  H
Sbjct: 226 CKPNPCQNGGTCH 238


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,993
Number of Sequences: 336
Number of extensions: 3024
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)