Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021706
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   100   4e-22
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   100   4e-22
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.3  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   4.3  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    25   7.5  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    25   7.5  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 99.5 bits (237), Expect = 4e-22
 Identities = 47/87 (54%), Positives = 51/87 (58%)
 Frame = +3

Query: 255 PRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXX 434
           PRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH                        
Sbjct: 77  PRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSL 136

Query: 435 XQARGHIIEKIPELPLVVADKVQEITR 515
             ARGH IE+IPE+PLVV D VQ   +
Sbjct: 137 LLARGHRIEEIPEVPLVVDDAVQSFQK 163



 Score = 96.7 bits (230), Expect = 3e-21
 Identities = 44/70 (62%), Positives = 54/70 (77%)
 Frame = +1

Query: 25  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 204
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 205 HQTSAESWGT 234
           HQTSAESWGT
Sbjct: 60  HQTSAESWGT 69



 Score = 76.2 bits (179), Expect = 4e-15
 Identities = 31/54 (57%), Positives = 45/54 (83%)
 Frame = +2

Query: 512 KTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGALIIFNKDQG 673
           KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR +QR+G L++FN+D G
Sbjct: 163 KTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTG 216


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 99.5 bits (237), Expect = 4e-22
 Identities = 47/87 (54%), Positives = 51/87 (58%)
 Frame = +3

Query: 255 PRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXX 434
           PRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH                        
Sbjct: 77  PRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSL 136

Query: 435 XQARGHIIEKIPELPLVVADKVQEITR 515
             ARGH IE+IPE+PLVV D VQ   +
Sbjct: 137 LLARGHRIEEIPEVPLVVDDAVQSFQK 163



 Score = 97.5 bits (232), Expect = 2e-21
 Identities = 45/70 (64%), Positives = 54/70 (77%)
 Frame = +1

Query: 25  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 204
           ++ ARP VS+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 205 HQTSAESWGT 234
           HQTSAESWGT
Sbjct: 60  HQTSAESWGT 69



 Score = 75.8 bits (178), Expect = 5e-15
 Identities = 31/54 (57%), Positives = 45/54 (83%)
 Frame = +2

Query: 512 KTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGALIIFNKDQG 673
           KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR +QR+G L++FN+D G
Sbjct: 163 KTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDAG 216


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = -2

Query: 321  HHDTCYRRHPDRTYEYHHH---GHADSGDSTSS 232
            H  +   R   ++ E+HHH   GHADS  + +S
Sbjct: 1292 HETSTSSRKSSKSGEHHHHHNEGHADSSSTRTS 1324


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 86  APCTVSLFSEYTDTKGRATDRLISLL 9
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 321 HHDTCYRRHPDRTYEYHHHGHADSGDSTS 235
           HH   Y  H    + + HH H  S +S+S
Sbjct: 17  HHTHDYDHHNHDHHGHDHHSHDSSSNSSS 45


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 297 HPDRTYEYHHHGHADSGDSTSSTP 226
           H    + +HHH H  S D   S+P
Sbjct: 296 HEGHHHHHHHHHHHHSHDDDPSSP 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,512,127
Number of Sequences: 5004
Number of extensions: 48849
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)