Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021706
(673 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 103 1e-22
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 103 2e-22
02_03_0279 + 17250347-17252098 29 2.6
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 29 4.5
06_01_0017 + 189346-189561,189614-189905,190024-190043 29 4.5
10_08_0166 + 15363630-15365633,15366959-15367496,15367577-15367878 28 5.9
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 28 7.8
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 28 7.8
08_02_0707 - 20212190-20214592 28 7.8
05_03_0419 - 13707843-13707860,13707936-13708010,13708251-137082... 28 7.8
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 103 bits (247), Expect = 1e-22
Identities = 46/90 (51%), Positives = 55/90 (61%)
Frame = +3
Query: 255 PRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXX 434
PRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 81 PRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSL 140
Query: 435 XQARGHIIEKIPELPLVVADKVQEITRPNR 524
ARGH IE +PELPLV++D + I + ++
Sbjct: 141 VLARGHRIETVPELPLVISDSAESIEKTSQ 170
Score = 75.4 bits (177), Expect = 4e-14
Identities = 38/68 (55%), Positives = 48/68 (70%), Gaps = 2/68 (2%)
Frame = +1
Query: 37 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 210
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+ AGHQ
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 211 TSAESWGT 234
TSAESWGT
Sbjct: 66 TSAESWGT 73
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/52 (48%), Positives = 35/52 (67%)
Frame = +2
Query: 512 KTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGALIIFNKD 667
KT QA+ L+++ A++D K S +R GKGKMRNRR I RKG LI++ +
Sbjct: 167 KTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKGPLIVYGTE 218
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 103 bits (246), Expect = 2e-22
Identities = 47/87 (54%), Positives = 53/87 (60%)
Frame = +3
Query: 255 PRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXX 434
PRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 80 PRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAATAVPSL 139
Query: 435 XQARGHIIEKIPELPLVVADKVQEITR 515
ARGH IE +PE PLVV+D ++ I +
Sbjct: 140 VLARGHRIEGVPEFPLVVSDSIESIEK 166
Score = 77.4 bits (182), Expect = 1e-14
Identities = 39/70 (55%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Frame = +1
Query: 28 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 204
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY VS+ AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Query: 205 HQTSAESWGT 234
HQTSAESWGT
Sbjct: 63 HQTSAESWGT 72
Score = 54.0 bits (124), Expect = 1e-07
Identities = 25/52 (48%), Positives = 36/52 (69%)
Frame = +2
Query: 512 KTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGALIIFNKD 667
KT Q++ L+++ A++D K S +RAGKGKMRNRR I RKG LI++ +
Sbjct: 166 KTAQSIKVLKQIGAYADAEKTKDSVAIRAGKGKMRNRRYINRKGPLIVYGTE 217
>02_03_0279 + 17250347-17252098
Length = 583
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = -2
Query: 318 HDTCYRRHPDRTYEYHHHGHADSGDSTSSTP*FSTGLVTSLLAHAVGLPRVLGHRNVNII 139
H + +R H Y+YHHH H S +S+ + +V ++ A+ R G+ V +
Sbjct: 363 HGSNHRHHYH--YQYHHHHHHIIASSAASSAATAASVVRIMIREAIARLRDSGYGFVALA 420
Query: 138 DQVR 127
+V+
Sbjct: 421 MRVK 424
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = +3
Query: 3 SLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 155
SL N + P+F V G SQA V + GAH G Q C F
Sbjct: 126 SLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>06_01_0017 + 189346-189561,189614-189905,190024-190043
Length = 175
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -3
Query: 458 NNVSSSLNERWDAGSSNGCRQGR--SPLSEVDATVPTP 351
N+ +S L+ +WDAGS + SPLS V A P
Sbjct: 103 NDSTSKLSFKWDAGSCSSASSSAMYSPLSAVSAPAKAP 140
>10_08_0166 + 15363630-15365633,15366959-15367496,15367577-15367878
Length = 947
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 246 RPNPRVRGGGTHRSGQGAFGNMCRGG 323
RP R +GGG+ SG GA G GG
Sbjct: 915 RPGFRTQGGGSGLSGSGAQGGPSMGG 940
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +3
Query: 3 SLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 155
SL N I +PTF +G + G S + + GAH G + C F
Sbjct: 127 SLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 342 SWGRTYVHHDTCYRRHPDRTYEYHH 268
SWGR H D RR P R+ +HH
Sbjct: 303 SWGRD--HADNRLRRSPSRSSNFHH 325
>08_02_0707 - 20212190-20214592
Length = 800
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = -2
Query: 321 HHDTCYRRHPDRTYEYHHHGHADSGDSTS 235
H+ C H D +HH H DS + S
Sbjct: 535 HNGACCEHHGDANKSHHHDHHHDSSNEES 563
>05_03_0419 -
13707843-13707860,13707936-13708010,13708251-13708286,
13709718-13709765,13710246-13710326,13710503-13710554,
13710671-13710730,13711266-13711346,13711461-13711577,
13711714-13711754,13711981-13712059,13712136-13712292,
13712586-13712718,13712799-13712926,13715152-13715314
Length = 422
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = -2
Query: 219 STGLVTSLLAHAVGLPRVLGHRNVNIIDQVRTD-GRLEHEREGLG 88
+TG+ +L+ + VG+P+VL ++ I Q+ D G +E +RE G
Sbjct: 204 ATGVYKTLVRYLVGVPQVL----LDFIRQINDDNGPMEEQRERYG 244
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,651,059
Number of Sequences: 37544
Number of extensions: 427190
Number of successful extensions: 1636
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1628
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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