Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021706
(673 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 109 3e-24
SB_5942| Best HMM Match : Sec7 (HMM E-Value=3.1e-09) 31 0.84
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_14955| Best HMM Match : CTP_transf_3 (HMM E-Value=8) 29 3.4
SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8) 28 6.0
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_8252| Best HMM Match : rve (HMM E-Value=0.13) 28 6.0
SB_6737| Best HMM Match : Rib_5-P_isom_A (HMM E-Value=9) 28 6.0
SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08) 28 7.9
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 28 7.9
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29) 28 7.9
SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04) 28 7.9
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 109 bits (261), Expect = 3e-24
Identities = 48/87 (55%), Positives = 56/87 (64%)
Frame = +3
Query: 255 PRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXX 434
PRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 74 PRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQQRRFAVCSALAASALPAL 133
Query: 435 XQARGHIIEKIPELPLVVADKVQEITR 515
ARGH IEKI E+PLV++D ++ +T+
Sbjct: 134 IMARGHRIEKIAEVPLVISDAIESVTK 160
Score = 90.2 bits (214), Expect = 1e-18
Identities = 42/67 (62%), Positives = 52/67 (77%)
Frame = +1
Query: 34 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 213
ARP+++V++E E+ LP VFKAPIRPDLVN VH +++KN RQPY V+K AGHQT
Sbjct: 2 ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQT 59
Query: 214 SAESWGT 234
SAESWGT
Sbjct: 60 SAESWGT 66
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/54 (55%), Positives = 39/54 (72%)
Frame = +2
Query: 512 KTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGALIIFNKDQG 673
KT AV L+ + A+ D+ K S+++RAGKGKMRNRR + RKG LII+N DQG
Sbjct: 160 KTSAAVKLLKAVNAYEDVEKCIDSKKIRAGKGKMRNRRTVMRKGPLIIYNNDQG 213
>SB_5942| Best HMM Match : Sec7 (HMM E-Value=3.1e-09)
Length = 304
Score = 31.1 bits (67), Expect = 0.84
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -2
Query: 327 YVHHDTCYRRHPDRTYEYHHHGHADSGDSTSSTP*FSTGLVTSLL 193
Y HH + H + +HHH H +T +T T ++T+++
Sbjct: 158 YYHHHLLHHHHHHWHHHHHHHRHHHHSFTTIATTTVITTIITTVI 202
>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -2
Query: 330 TYVHHDTCYRRHPDRTYEYHHHGHAD 253
TY H DT R+HPD H HA+
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHAN 148
>SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2179
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -2
Query: 306 YRRHPDRTYEYHHHG--HADSGDSTSSTP*FSTGLVTSLL 193
+ RHP + +H H A S S+SS P FS G++ L+
Sbjct: 890 WSRHPSPPHHHHPHALVAASSSSSSSSPPCFSRGILFLLI 929
>SB_14955| Best HMM Match : CTP_transf_3 (HMM E-Value=8)
Length = 437
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = -2
Query: 339 WGRTYVHHDTCYRRHPDRTYEYHHHGHADSGDSTSSTP 226
W + H + DR EY G D GDS +S P
Sbjct: 221 WVQHRKHDSSICNDQSDRDIEYEGQGEVDMGDSVTSLP 258
>SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 664
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 330 TYVHHDTCYRRHPDRTYEYHHHGHADS 250
TY H DT +HPD H HA++
Sbjct: 323 TYTHQDTQMHKHPDTQMYVHAPRHANA 349
>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
Length = 193
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 321 HHDTCYRRHPDRTYEYHHH 265
HH YR H + Y +HHH
Sbjct: 96 HHHQHYRHHRHQHYRHHHH 114
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 101 GRGLAAPCTVSLFSEYTDTKGRATDRLI 18
G+GL C+V+L S Y T+G+ RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190
>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
Length = 264
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 327 YVHHDTCYRRHPDRTYEYHHHGH 259
Y HH +RR R + +HHH H
Sbjct: 233 YHHHHHHHRRRRRRRHHHHHHHH 255
>SB_6737| Best HMM Match : Rib_5-P_isom_A (HMM E-Value=9)
Length = 249
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -3
Query: 521 VWSCYLLDFVGYNQGK 474
VW+C+LL+F+ Y+ GK
Sbjct: 7 VWTCFLLNFLPYSTGK 22
>SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 903
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 306 YRRHPDRTYEYHHHGHADSGDSTSST 229
+++H D+ ++ HHH S TSST
Sbjct: 386 HKKHKDKEHKEHHHKKKRSHSKTSST 411
>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
Length = 839
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 321 HHDTCYRRHPDRTYEYHHH 265
HH + RH R + YHHH
Sbjct: 570 HHHLHHHRHHHRHHHYHHH 588
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = -2
Query: 321 HHDTCYRRHPDRTYEYHHHGHADSGDSTSST 229
HH + H + YHHH H + ++ +T
Sbjct: 229 HHHNHHHHHHHHYHHYHHHHHHHNNNTIITT 259
>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
Length = 1779
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 321 HHDTCYRRHPDRTYEYHHHGH 259
HH + RH DR + + HH H
Sbjct: 340 HHRNKHYRHHDRNHHHRHHHH 360
>SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04)
Length = 1223
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -2
Query: 321 HHDTCYRRHPDRTYEYHHHGHADSGDSTS 235
HH+ C PD+T A GDST+
Sbjct: 1084 HHEVCRMASPDKTTRNSKSARAAGGDSTA 1112
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,075,418
Number of Sequences: 59808
Number of extensions: 426187
Number of successful extensions: 1409
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -