Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021706
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   102   3e-22
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    29   3.0  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    28   6.9  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  102 bits (244), Expect = 3e-22
 Identities = 46/87 (52%), Positives = 55/87 (63%)
 Frame = +3

Query: 255 PRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXX 434
           PRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH                        
Sbjct: 76  PRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPAL 135

Query: 435 XQARGHIIEKIPELPLVVADKVQEITR 515
            QARGH+I+++ E+PLVV+DKV+   +
Sbjct: 136 LQARGHVIDQVAEVPLVVSDKVESFRK 162



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 36/67 (53%), Positives = 46/67 (68%)
 Frame = +1

Query: 34  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 213
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q 
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61

Query: 214 SAESWGT 234
           SAESWGT
Sbjct: 62  SAESWGT 68



 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 30/52 (57%), Positives = 41/52 (78%)
 Frame = +2

Query: 512 KTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGALIIFNKD 667
           KTK+AV+FLRR   W+DI KVY S+R RAGKGK+RNR+  Q+ G ++I+ +D
Sbjct: 162 KTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVIYGQD 213


>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
           protein C29A12.4 protein.
          Length = 1560

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -3

Query: 521 VWSCYLLDFVGYNQGKLGNL-FNNVSSSLNERWDAGSSNGCRQGRSPLSEVDATVPTP 351
           VWS  L    GY  G + N+  N VS+ + + ++A +S G   G S  +E+D   P P
Sbjct: 606 VWSIALQK--GYT-GCIKNIRMNGVSTKIGQEFEASNSTGIELGCSLSNELDICEPNP 660


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 327 YVHHDTCYRRHPDRTYEYHHHGHADSGDSTSST 229
           + HH   +  HP     +HHH H  + DS+SS+
Sbjct: 81  HTHH--AHGAHPGHHEVHHHHHHVKAQDSSSSS 111


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 321 HHDTCYRRHPDRTYEYHHHGH 259
           HHD  +++H  + ++ HHHGH
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,333,952
Number of Sequences: 27780
Number of extensions: 300377
Number of successful extensions: 1001
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)