Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021706
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.50 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.1  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
 Frame = -2

Query: 321 HHDTCYRRHPD-RTYEYHHHGHADSGDSTSSTP 226
           HH T    H       +HHH HA +     STP
Sbjct: 415 HHHTMGHGHSHIHATPHHHHSHAATPHHQHSTP 447


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 288 GQGAFGNMCRGGRMFAP 338
           G G FG++CRG     P
Sbjct: 640 GGGEFGDVCRGKLKLPP 656


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +3

Query: 201 WSPNQC*IMGYWTCCRPNPRV 263
           W P+    +  WTC +P P +
Sbjct: 476 WMPSIRGAIQQWTCRQPEPLI 496


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,490
Number of Sequences: 438
Number of extensions: 3362
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)