Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021706
(673 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 101 6e-22
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 101 6e-22
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 30 1.2
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 30 1.2
At2g33990.1 68415.m04162 calmodulin-binding family protein simil... 29 2.1
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy... 29 2.1
At4g39480.1 68417.m05585 cytochrome P450 family protein contains... 28 4.9
At5g01010.1 68418.m00001 expressed protein 28 6.5
At3g25840.1 68416.m03219 protein kinase family protein contains ... 27 8.6
At1g02065.2 68414.m00127 squamosa promoter-binding protein-like ... 27 8.6
At1g02065.1 68414.m00128 squamosa promoter-binding protein-like ... 27 8.6
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 101 bits (241), Expect = 6e-22
Identities = 45/87 (51%), Positives = 52/87 (59%)
Frame = +3
Query: 255 PRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXX 434
PRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 83 PRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPAL 142
Query: 435 XQARGHIIEKIPELPLVVADKVQEITR 515
ARGH IE +PE+PLVV+D + + +
Sbjct: 143 VMARGHKIENVPEMPLVVSDSAEAVEK 169
Score = 85.4 bits (202), Expect = 3e-17
Identities = 42/71 (59%), Positives = 49/71 (69%), Gaps = 2/71 (2%)
Frame = +1
Query: 28 SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 201
+ ARPLV+V + T Q LP V AP+RPD+VN VH +S NSRQPY VSK+A
Sbjct: 5 AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64
Query: 202 GHQTSAESWGT 234
GHQTSAESWGT
Sbjct: 65 GHQTSAESWGT 75
Score = 51.2 bits (117), Expect = 6e-07
Identities = 24/52 (46%), Positives = 33/52 (63%)
Frame = +2
Query: 512 KTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGALIIFNKD 667
KT A+ L+++ A+ D K S +R GKGKMRNRR I RKG L++F +
Sbjct: 169 KTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVFGTE 220
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 101 bits (241), Expect = 6e-22
Identities = 45/87 (51%), Positives = 52/87 (59%)
Frame = +3
Query: 255 PRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXX 434
PRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 82 PRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPAL 141
Query: 435 XQARGHIIEKIPELPLVVADKVQEITR 515
ARGH IE +PE+PLVV+D + + +
Sbjct: 142 VMARGHKIENVPEMPLVVSDSAEAVEK 168
Score = 87.4 bits (207), Expect = 8e-18
Identities = 42/74 (56%), Positives = 53/74 (71%), Gaps = 2/74 (2%)
Frame = +1
Query: 19 MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 192
M+ + ARPLV++ + + T Q + LP V AP+RPD+VN VH +S NSRQPY VS
Sbjct: 1 MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60
Query: 193 KEAGHQTSAESWGT 234
K+AGHQTSAESWGT
Sbjct: 61 KKAGHQTSAESWGT 74
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/52 (44%), Positives = 33/52 (63%)
Frame = +2
Query: 512 KTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGALIIFNKD 667
KT A+ L+++ A+ D K S +R GKGKMRNRR I RKG L+++ +
Sbjct: 168 KTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVYGTE 219
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +2
Query: 317 WWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTHY*KDSRASLGCSRQ 496
WW +V LA+ APS P + L SR C P ++S + H D+ R
Sbjct: 465 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC-PSPLSQSSKQHHIRLDNHFDTSTPRS 523
Query: 497 S 499
S
Sbjct: 524 S 524
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +2
Query: 317 WWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTHY*KDSRASLGCSRQ 496
WW +V LA+ APS P + L SR C P ++S + H D+ R
Sbjct: 464 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC-PSPLSQSSKQHHIRLDNHFDTSTPRS 522
Query: 497 S 499
S
Sbjct: 523 S 523
>At2g33990.1 68415.m04162 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 249
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +2
Query: 467 SRASLGCSRQSPRDNKTKQAVIFLRRLKAWSDILKVYKSQRL-RAGKGKMRNRR 625
+RA L +QS ++ QAV+ LR L +WS I K++R+ + +++N+R
Sbjct: 73 ARAKLSTEKQSVKN----QAVVTLRYLHSWSKIQSEIKARRVCMVTEWRLKNKR 122
>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 497
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +1
Query: 43 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 189
LV +++ SE+++ PLPF K+P +PD++ H + NS+ C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397
>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 989
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 94 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 189
P+PF K+P +PD++ H + NSR +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 94 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 189
P+PF K+P +PD++ H + NS+ +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887
>At5g01010.1 68418.m00001 expressed protein
Length = 409
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = -2
Query: 219 STGLVTSLLAHAVGLPRVLGHRNVNIIDQVR-TDGRLEHEREGLG 88
+TG+ +L+ + VG+P+VL ++ I Q+ DG +E +RE G
Sbjct: 203 ATGVYKTLVKYLVGVPQVL----LDFIRQINDDDGPMEEQRERYG 243
>At3g25840.1 68416.m03219 protein kinase family protein contains
Pfam profile: PF00069 eukaryotic protein kinase domain
Length = 935
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = -2
Query: 303 RRHPDRTYEYHHHGHADSGDSTSSTP*FSTGLVTSLLAHAVGLPRVLGH 157
+RH R +++HHH H D S G T +L P V+ +
Sbjct: 29 KRHKHRHHKHHHHRHRHHRDKKRENEIPSAGDETEILDVTPAAPIVVSN 77
>At1g02065.2 68414.m00127 squamosa promoter-binding protein-like 8
(SPL8) identical to squamosa promoter binding
protein-like 8 [Arabidopsis thaliana] GI:5931679;
contains Pfam profile PF03110: SBP domain
Length = 246
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -2
Query: 321 HHDTCYRR--HPDRTYEYHHHGHADSGDSTSSTP 226
HH T Y + ++ +HHH H+ G +T++TP
Sbjct: 63 HHLTLYGQTNSNNQFLHHHHHHHSLYGSTTTTTP 96
>At1g02065.1 68414.m00128 squamosa promoter-binding protein-like 8
(SPL8) identical to squamosa promoter binding
protein-like 8 [Arabidopsis thaliana] GI:5931679;
contains Pfam profile PF03110: SBP domain
Length = 333
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -2
Query: 321 HHDTCYRR--HPDRTYEYHHHGHADSGDSTSSTP 226
HH T Y + ++ +HHH H+ G +T++TP
Sbjct: 63 HHLTLYGQTNSNNQFLHHHHHHHSLYGSTTTTTP 96
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,874,144
Number of Sequences: 28952
Number of extensions: 292988
Number of successful extensions: 1028
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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