Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021705
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    64   2e-11
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    29   0.99 
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    27   2.3  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    27   2.3  
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    27   4.0  
SPAC1782.03 |||microfibrillar-associated protein family protein|...    27   4.0  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    26   5.3  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    26   5.3  
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ...    26   7.0  

>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 35/84 (41%), Positives = 46/84 (54%)
 Frame = +2

Query: 512 KSIRRAFIRKVYAILMCQLMVTMGFIALFLYHRPTKVWVAQNPFMFWVAFIVLIVCLIAM 691
           KSIR AF+RKVYAIL  QL VT  F  +F  H     WV  +P+   + F + +V L  +
Sbjct: 52  KSIRMAFLRKVYAILTAQLFVTSLFGGIFYLHPAFSFWVQMHPWFLILNFFISLVVLFGL 111

Query: 692 ACCPDVRRKAPTNFIFLAIFTAAQ 763
              P      P N+IFL +FTA +
Sbjct: 112 IMKP---YSYPRNYIFLFLFTALE 132


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +3

Query: 294 WTIPTGWRLPARWSLPSRRSVSPGWSIPAGGYA 392
           W + +   +P+RW   +   ++P W IP  G++
Sbjct: 350 WNVYSKKDIPSRWHYSNNERIAPVWMIPDVGWS 382


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -3

Query: 745 GQEYEVRRSFASHVGTARHRDETDYQHYEGHPEHEGILGHP 623
           GQ  E  +++ SH+   R +   + Q  + +  H G   HP
Sbjct: 155 GQGSEPAKAYMSHISNLRKKSRLNLQEIQKNSLHTGNTSHP 195


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 206 QPNYESMYQNQGGPYPRAGRTRKVDRTRKVDH 301
           +PNY S  Q Q G Y R G    +DR+R V++
Sbjct: 402 RPNYNSQPQYQRGSYNREG--GNMDRSRNVNY 431


>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 209 PNYESMYQNQGGPYPRAGRTRKVDRTRK 292
           PNY S Y+N   P+   G   KV+  ++
Sbjct: 344 PNYSSRYENSNTPFLNKGTVIKVNANQR 371


>SPAC1782.03 |||microfibrillar-associated protein family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +1

Query: 634 KSLHVLGGLHSADSLSHR 687
           K+LH LGGLHS   LS R
Sbjct: 335 KNLHRLGGLHSDSPLSKR 352


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +3

Query: 474  GEDGEVKGFDFTKNLYAGLSSERCTRS 554
            G DG ++ F+F ++++  + SER +R+
Sbjct: 1174 GGDGVIRHFEFRRSMHCSILSERRSRA 1200


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +3

Query: 330  WSLPSRRSVSPGWSIPAGGYAPPQPGF 410
            ++ P   ++SPG+ + +  Y+P  PG+
Sbjct: 1539 YTSPFSSAMSPGYGLTSPSYSPSSPGY 1565


>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/50 (22%), Positives = 20/50 (40%)
 Frame = -3

Query: 658 GHPEHEGILGHPDFGRSVVQEQSDETHRHHQLTHQDRVHLSDESPAYRFF 509
           G+P+   ++ +         E+  ET RH    H  +    + S +Y  F
Sbjct: 122 GYPDDRALMNYHSTVTPQTSERRRETRRHQNNQHSQQYSSQERSSSYNNF 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,217,974
Number of Sequences: 5004
Number of extensions: 67892
Number of successful extensions: 222
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)