Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021705
(780 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14730.1 68417.m02265 transmembrane protein-related low simil... 54 1e-07
At1g03070.1 68414.m00281 expressed protein low similarity to N-m... 51 1e-06
At4g02690.1 68417.m00364 hypothetical protein low similarity to ... 50 2e-06
At3g63310.1 68416.m07121 expressed protein low similarity to N-m... 48 9e-06
At4g15470.1 68417.m02364 expressed protein low similarity to N-m... 44 1e-04
At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family pr... 36 0.023
At5g15300.1 68418.m01792 pentatricopeptide (PPR) repeat-containi... 33 0.28
At5g19520.1 68418.m02325 mechanosensitive ion channel domain-con... 32 0.37
At2g04620.1 68415.m00470 cation efflux family protein potential ... 31 0.65
At5g04540.1 68418.m00454 expressed protein 30 1.5
At3g13772.1 68416.m01738 endomembrane protein 70, putative TM4 f... 29 3.5
At2g24170.1 68415.m02888 endomembrane protein 70, putative simil... 29 3.5
At1g77400.1 68414.m09013 expressed protein 29 3.5
At3g02050.1 68416.m00168 potassium transporter (KUP3) nearly ide... 29 4.6
At4g04780.1 68417.m00700 expressed protein very low similarity t... 28 6.0
At3g19180.1 68416.m02435 cell division protein-related weak simi... 28 6.0
At5g10840.1 68418.m01259 endomembrane protein 70, putative TM4 f... 28 8.0
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 28 8.0
At3g25070.1 68416.m03132 RPM1-interacting protein 4 (RIN4) ident... 28 8.0
At1g11310.1 68414.m01299 seven transmembrane MLO family protein ... 28 8.0
>At4g14730.1 68417.m02265 transmembrane protein-related low
similarity to transmembrane protein OTMP [Ovis aries]
GI:9965379
Length = 235
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/79 (36%), Positives = 47/79 (59%)
Frame = +2
Query: 518 IRRAFIRKVYAILMCQLMVTMGFIALFLYHRPTKVWVAQNPFMFWVAFIVLIVCLIAMAC 697
+R AFIRK+Y+IL QL+VT+G A+ + RP ++ + V F++L++ L+ +
Sbjct: 24 LRWAFIRKLYSILSLQLLVTVGVSAVVYFVRPIPEFITETHRGLAVFFVILLLPLLLLWP 83
Query: 698 CPDVRRKAPTNFIFLAIFT 754
+K P N I L+IFT
Sbjct: 84 LLAFEKKHPINCIVLSIFT 102
>At1g03070.1 68414.m00281 expressed protein low similarity to
N-methyl-D-aspartate receptor-associated protein
[Drosophila melanogaster] GI:567104; contains Pfam
profile PF01027: Uncharacterized protein family UPF0005
Length = 247
Score = 50.8 bits (116), Expect = 1e-06
Identities = 28/83 (33%), Positives = 44/83 (53%)
Frame = +2
Query: 518 IRRAFIRKVYAILMCQLMVTMGFIALFLYHRPTKVWVAQNPFMFWVAFIVLIVCLIAMAC 697
+R FIRKVY+I+ QL+ T+ + ++ RP V+ A + +++I LI M
Sbjct: 34 LRWGFIRKVYSIIAFQLLATIAVASTVVFVRPIAVFFATTSAGLALWIVLIITPLIVMCP 93
Query: 698 CPDVRRKAPTNFIFLAIFTAAQA 766
+K P N++ L IFT A A
Sbjct: 94 LYYYHQKHPVNYLLLGIFTVALA 116
>At4g02690.1 68417.m00364 hypothetical protein low similarity to
N-methyl-D-aspartate receptor-associated protein
[Drosophila melanogaster] GI:567104, NMDA receptor
glutamate-binding subunit [Rattus sp.] GI:8248741;
contains Pfam profile PF01027: Uncharacterized protein
family UPF0005
Length = 248
Score = 49.6 bits (113), Expect = 2e-06
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Frame = +2
Query: 506 HEK-SIRRAFIRKVYAILMCQLMVTMGFIALFLYHRPTKVWVAQNPFMFWVAFIVLIVCL 682
HE +R FIRKVY+I+ QL+ T+ A + RP ++ A + +++I L
Sbjct: 29 HENPELRWGFIRKVYSIIAFQLLATVAVAATVVTVRPIALFFATTGLGLALYIVIIITPL 88
Query: 683 IAMACCPDVRRKAPTNFIFLAIFTAAQA 766
I + +K P N++ L IFT A A
Sbjct: 89 IVLCPLYYYHQKHPVNYLLLGIFTLALA 116
>At3g63310.1 68416.m07121 expressed protein low similarity to
N-methyl-D-aspartate receptor-associated protein
[Drosophila melanogaster] GI:567104; contains Pfam
profile PF01027: Uncharacterized protein family UPF0005
Length = 239
Score = 47.6 bits (108), Expect = 9e-06
Identities = 27/83 (32%), Positives = 43/83 (51%)
Frame = +2
Query: 518 IRRAFIRKVYAILMCQLMVTMGFIALFLYHRPTKVWVAQNPFMFWVAFIVLIVCLIAMAC 697
+R +FIRKVY+I+ QL+VT+ A + V+ F + ++++ LI M
Sbjct: 25 LRWSFIRKVYSIISIQLLVTIAVAATVVKVHSISVFFTTTTAGFALYILLILTPLIVMCP 84
Query: 698 CPDVRRKAPTNFIFLAIFTAAQA 766
+K P N++ L IFT A A
Sbjct: 85 LYYYHQKHPVNYLLLGIFTVALA 107
>At4g15470.1 68417.m02364 expressed protein low similarity to
N-methyl-D-aspartate receptor-associated protein
[Drosophila melanogaster] GI:567104; contains Pfam
profile PF01027: Uncharacterized protein family UPF0005
Length = 256
Score = 44.0 bits (99), Expect = 1e-04
Identities = 28/89 (31%), Positives = 43/89 (48%)
Frame = +2
Query: 494 GFRFHEKSIRRAFIRKVYAILMCQLMVTMGFIALFLYHRPTKVWVAQNPFMFWVAFIVLI 673
G + E +R FIRKVY IL QL++T A+ + + P + +P + + I
Sbjct: 37 GLSYGENQLRWGFIRKVYGILSAQLLLTTLISAVVVLNPPVNDLLTGSP---GILLFLCI 93
Query: 674 VCLIAMACCPDVRRKAPTNFIFLAIFTAA 760
V I + +K P N I LA+FT +
Sbjct: 94 VPFILIWPLHIYHQKHPVNLILLALFTVS 122
>At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family
protein
Length = 571
Score = 36.3 bits (80), Expect = 0.023
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -3
Query: 688 RDETDYQHYEGHPEHEGILGHPDFGRSVVQEQSDETHRHHQ 566
++E DYQHY+ H H G H F + QS H HHQ
Sbjct: 527 KNEVDYQHYDDHQHHNG--HHHPFDHQM--NQSAHHHHHHQ 563
>At5g15300.1 68418.m01792 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 548
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 437 R*TGLYPTERLSRRRWRSQGFRFHEKSIRRAFIRKVY 547
R T + + S+ WRS GF FH K +R F+ Y
Sbjct: 112 RYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEY 148
>At5g19520.1 68418.m02325 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 742
Score = 32.3 bits (70), Expect = 0.37
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +1
Query: 550 DPDVSADGDDGFHRSVPVPPTDQSLGGPKSLHVLGGLHSADSLSHRDGVLSRRETQSS 723
+P S D D G +S PVPP S+ P+ G +H + +G++ R+ S
Sbjct: 32 NPLASPDSDAGIEKSKPVPPI--SIPTPEIYKFSGSVHKPPKIPSPEGLVRRKSLSRS 87
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 31.5 bits (68), Expect = 0.65
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -3
Query: 691 HRDETDYQHYEGHPEHEGILGHPDFGRSVVQEQSDETHRHHQLTHQDRVHLSD 533
H++E +QH + H +HE H D + + D H H H++ H D
Sbjct: 565 HKNEEHHQHSDSH-KHEEHHQHSDSHKHEEHHEHDHHHHSHSHKHEECNHNHD 616
>At5g04540.1 68418.m00454 expressed protein
Length = 833
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 445 RAISHRTTQSAKMA-KSRVSISRKIYTQGFHPKGVRDPDVSADGDDGFHRSVPVPPTDQS 621
R IS +SAK A K R ISR + + G K R+ D + + +DG + P QS
Sbjct: 704 RDISRAARESAKRATKERAVISRAVQSLGCKVKFTRNGDCTVEVEDGPQKCSHSIPQKQS 763
>At3g13772.1 68416.m01738 endomembrane protein 70, putative TM4
family;
Length = 641
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/55 (23%), Positives = 32/55 (58%)
Frame = +2
Query: 530 FIRKVYAILMCQLMVTMGFIALFLYHRPTKVWVAQNPFMFWVAFIVLIVCLIAMA 694
+++ V++IL+ ++ G + + L+ T +W+ Q ++F FIV ++ ++ A
Sbjct: 495 YMKPVFSILIGGIL-PFGAVFIELFFILTSIWLNQFYYIFGFLFIVFLILIVTCA 548
>At2g24170.1 68415.m02888 endomembrane protein 70, putative similar
to MURA transposase of maize Mutator transposon
Length = 637
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/55 (25%), Positives = 31/55 (56%)
Frame = +2
Query: 530 FIRKVYAILMCQLMVTMGFIALFLYHRPTKVWVAQNPFMFWVAFIVLIVCLIAMA 694
++ +++IL+ ++ G + + L+ T +W+ Q ++F FIV I+ +I A
Sbjct: 491 YMNPIFSILIGGIL-PFGAVFIELFFILTSIWLHQFYYIFGFLFIVFIILIITCA 544
>At1g77400.1 68414.m09013 expressed protein
Length = 232
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 330 WSLPSRRSVSPGWSIPAGGYA 392
W++ SRRSVSP W P ++
Sbjct: 192 WTVSSRRSVSPRWESPKSSFS 212
>At3g02050.1 68416.m00168 potassium transporter (KUP3) nearly
identical to potassium transporter KUP3p [Arabidopsis
thaliana] gi|6742169|gb|AAF19432; similar to tiny root
hair 1 protein [Arabidopsis thaliana]
gi|11181958|emb|CAC16137; KUP/HAK/KT Transporter family
member, PMID:11500563
Length = 789
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = +2
Query: 503 FHEKSIRRAFIRKVYAILMCQLMVTMGFIALFLYHRPTKVWVAQNPFMFWVAFIVLIVCL 682
F SIR AF VY L+ Q M F++ L P + + +FW F++ +
Sbjct: 294 FTSVSIRVAFAVVVYPCLVVQYMGQAAFLSKNLGSIPNSFYDSVPDPVFWPVFVIATLAA 353
Query: 683 I 685
I
Sbjct: 354 I 354
>At4g04780.1 68417.m00700 expressed protein very low similarity to
SP|Q13503 RNA polymerase II holoenzyme component SRB7
(RNAPII complex component SRB7) {Homo sapiens}
Length = 381
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 321 VASTLWVWSTLRVRSTLRVRPARGYG 244
VAS +W+W +R + T + P YG
Sbjct: 150 VASIVWLWGRVRFKETTEIVPYEFYG 175
>At3g19180.1 68416.m02435 cell division protein-related weak
similarity to cell division protein Ftn2 [Synechococcus
sp. PCC 7942] GI:16226084
Length = 819
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +1
Query: 451 ISHRTTQSAKMAKSRVSISRKIYT--QGFHPKGVRDPDVSADGDDGFHRSVPVPPTDQSL 624
++H+T Q V+ S+ +YT + P ++ P VSA +D S+P ++L
Sbjct: 499 MNHKTNQRPLSTTQFVNSSQHLYTAVEQLTPTDLQSPVVSAKNNDETSASMPSVQLKRNL 558
Query: 625 GGPKS 639
G K+
Sbjct: 559 GVHKN 563
>At5g10840.1 68418.m01259 endomembrane protein 70, putative TM4
family;
Length = 648
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/55 (21%), Positives = 31/55 (56%)
Frame = +2
Query: 530 FIRKVYAILMCQLMVTMGFIALFLYHRPTKVWVAQNPFMFWVAFIVLIVCLIAMA 694
++ V++IL+ ++ G + + L+ T +W+ Q ++F F+V ++ ++ A
Sbjct: 502 YMNPVFSILIGGIL-PFGAVFIELFFILTSIWLNQFYYIFGFLFLVFVILIVTCA 555
>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) nearly identical to
P|P18616 DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) {Arabidopsis thaliana}
Length = 1840
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 333 SLPSRRSVSPGWSIPAGGYAPPQPGF 410
S P SPG+S + GY+P PG+
Sbjct: 1548 SSPGYSPTSPGYSPTSPGYSPTSPGY 1573
>At3g25070.1 68416.m03132 RPM1-interacting protein 4 (RIN4)
identical to SP|Q8GYN5 RPM1-interacting protein 4
{Arabidopsis thaliana}
Length = 211
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 188 KLNSKDQPNYESMYQNQGGPYPRAGRTR--KVDRTRK 292
K+ + + P Y S Q+Q P+P + RT+ +VD R+
Sbjct: 36 KIMNPNDPEYNSDSQSQAPPHPPSSRTKPEQVDTVRR 72
>At1g11310.1 68414.m01299 seven transmembrane MLO family protein /
MLO-like protein 2 (MLO2) idenctical to membrane protein
Mlo2 [Arabidopsis thaliana] gi|14091574|gb|AAK53795;
similar to Mlo [Hordeum vulgare subsp. vulgare]
gi|1877221|emb|CAB06083 SWISS-PROT:P93766
Length = 573
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = -3
Query: 664 YEGHPEHEGILGHPDFGRSVVQEQSDETHRHHQLTHQ--DRVHLSDESPAYR 515
Y GH HE P+ Q Q ET HH L H+ + V S E P R
Sbjct: 515 YSGHGHHEHQFWDPES-----QHQEAETSTHHSLAHESSEPVLASVELPPIR 561
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,322,796
Number of Sequences: 28952
Number of extensions: 383503
Number of successful extensions: 1218
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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