Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021704
(804 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 4e-10
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32) 32 0.47
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23) 31 1.4
SB_22971| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_7678| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_933| Best HMM Match : ExoD (HMM E-Value=6) 29 3.3
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09) 29 4.4
SB_51986| Best HMM Match : HLH (HMM E-Value=0.15) 29 5.8
SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07) 28 7.7
>SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 62.5 bits (145), Expect = 4e-10
Identities = 31/75 (41%), Positives = 46/75 (61%)
Frame = +3
Query: 33 MPSAANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQ 212
MPSA++ S+ A + D + + ++E K+RNLEKRK KL Y+ +G+ELN+DQ
Sbjct: 1 MPSASSKPSDSQALMDSSDIA-KSGLLLVEKKVRNLEKRKLKLDGYKKQMDSGQELNADQ 59
Query: 213 KVAVAKYDEVAQTLN 257
K A+A D V L+
Sbjct: 60 KAAIANLDVVEMNLD 74
Score = 48.0 bits (109), Expect = 9e-06
Identities = 25/53 (47%), Positives = 33/53 (62%)
Frame = +2
Query: 347 RYAAETNKIKEVLLILDCLMQMGSADARTDFINGTNGAAKLTEDDLKILDDLY 505
++ A+ K+ EVL L LM S D RTDF+NGTNGA +TED +D+ Y
Sbjct: 109 QHNADVLKVNEVLE-LQHLMDSLSEDVRTDFLNGTNGAVVVTEDQFVQIDEFY 160
>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
Length = 2436
Score = 32.3 bits (70), Expect = 0.47
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +3
Query: 84 KDTPIRQIMTIIEHKIRNLEKRKSKLTSY-RDLQKAGKELNSDQKVAVAK 230
KD+ ++ ++ E KIR L+KR S+L S R L+ K+L D+K A+ K
Sbjct: 322 KDSGNQKATSLGEEKIRKLKKRNSELVSIARQLEDKAKKL-QDEKNAILK 370
>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
Length = 3368
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/55 (23%), Positives = 30/55 (54%)
Frame = +3
Query: 57 SEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVA 221
+E+P + + T++++ + + ++ T +RD+Q+ GKE NSD ++
Sbjct: 1928 TEQPVAPSASLQTTKAEKTLVKNTAESTKYTETSSTQHRDIQQRGKEQNSDDALS 1982
>SB_22971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 120 EHKIRNLEKRKSKLTSYRDLQKAGKELNSDQ 212
+ KIRNL+K+ ++ + QKAGK+L +Q
Sbjct: 65 DKKIRNLKKKLRQIEELKTQQKAGKQLEVNQ 95
>SB_7678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1432
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +3
Query: 9 KKSCCL*RMPSAANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKA 188
KK L ++PS N K + KD+ IR ++T I E+++ +D Q
Sbjct: 1136 KKDRTLRKLPSKENMSDGKDNLEDGKDSSIRGVLTDYNISIPAQERKRKLGRPRKDEQNL 1195
Query: 189 G-KELNSDQKVA 221
G K+ N + + A
Sbjct: 1196 GSKKKNGESQTA 1207
>SB_933| Best HMM Match : ExoD (HMM E-Value=6)
Length = 555
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = -1
Query: 504 YKSSKIFKSSSVNLAAPFVPFMKSVLASALPICIRQSRISKTSFILLVSA 355
Y SS S++N++ PF+P+ V+ P +RQ I K FI LVSA
Sbjct: 82 YPSSMDGVDSTLNMS-PFIPY---VIRPKGPRLLRQGTIMKAGFIGLVSA 127
>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
Length = 1103
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +3
Query: 57 SEKPASSEDKDTPIRQIMTIIEHKIRNLEK-RKSKLTSYRDLQKAGKELNSDQKVAVAKY 233
SE A ++KD + + + + KI+ + +KSK +L KAGK + + V K
Sbjct: 861 SESEAEDDEKD--VEEKHEVKQDKIKKKKHDKKSKAKDKDNLAKAGKAIQAILDVTTRKK 918
Query: 234 DEVAQTL 254
+ AQ+L
Sbjct: 919 ADAAQSL 925
>SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)
Length = 2110
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +3
Query: 78 EDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAK--YDEVAQT 251
E +D PI +I ++++ N+EK K ++D ++ GK +K K D+ QT
Sbjct: 208 EIEDEPINEISSLVDFVDENIEKSLLKDPLWQDEEEKGKRKKKKKKRKRDKSLQDQTCQT 267
Query: 252 L 254
+
Sbjct: 268 M 268
>SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)
Length = 1128
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 78 EDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRD 176
ED++ IRQ+ IIE K ++E++ +L RD
Sbjct: 847 EDREDEIRQLRQIIEDKESDIEEQVMELIHLRD 879
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,765,161
Number of Sequences: 59808
Number of extensions: 381962
Number of successful extensions: 774
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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