Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021704
(804 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr... 33 0.32
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch... 33 0.32
U41549-3|AAA83283.2| 245|Caenorhabditis elegans Hypothetical pr... 31 1.3
AC006777-7|AAK72306.2| 367|Caenorhabditis elegans Seven tm rece... 29 3.9
Z81514-5|CAB04192.2| 611|Caenorhabditis elegans Hypothetical pr... 28 6.8
L11247-4|AAK84520.1| 392|Caenorhabditis elegans Hypothetical pr... 28 6.8
AF016424-2|AAB65332.1| 720|Caenorhabditis elegans Peroxisome as... 28 9.0
AB012224-1|BAA76440.1| 720|Caenorhabditis elegans Pex6p homolog... 28 9.0
AB010968-1|BAA33544.1| 720|Caenorhabditis elegans PEX6 protein. 28 9.0
>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
K12F2.1 protein.
Length = 1969
Score = 32.7 bits (71), Expect = 0.32
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +3
Query: 57 SEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYR-DLQKAGKELNSDQKVAVAKY 233
+E S EDK + +I +E ++ LE+ + R D++KA +++ D KVA
Sbjct: 1020 NEDLQSEEDKVNHLEKIRNKLEQQMDELEENIDREKRSRGDIEKAKRKVEGDLKVAQENI 1079
Query: 234 DEVAQ 248
DE+ +
Sbjct: 1080 DEITK 1084
>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
protein.
Length = 1969
Score = 32.7 bits (71), Expect = 0.32
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +3
Query: 57 SEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYR-DLQKAGKELNSDQKVAVAKY 233
+E S EDK + +I +E ++ LE+ + R D++KA +++ D KVA
Sbjct: 1020 NEDLQSEEDKVNHLEKIRNKLEQQMDELEENIDREKRSRGDIEKAKRKVEGDLKVAQENI 1079
Query: 234 DEVAQ 248
DE+ +
Sbjct: 1080 DEITK 1084
>U41549-3|AAA83283.2| 245|Caenorhabditis elegans Hypothetical
protein F22F1.3 protein.
Length = 245
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = +1
Query: 40 QLLMQNLKSRPLRRIRIHQFDKL 108
+LL N KSR RRIRIH DKL
Sbjct: 127 RLLKPNAKSRITRRIRIHVIDKL 149
>AC006777-7|AAK72306.2| 367|Caenorhabditis elegans Seven tm
receptor protein 222 protein.
Length = 367
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -1
Query: 789 WHIYFWFMFPCSWHLFFYWNRTFFYFCDCT--IYSFIKVSTFM 667
W I WF+ P S+ W+ ++FC T + +FIK S ++
Sbjct: 133 WKIVIWFLLPLSFGAI--WSFDGYFFCRPTEEVTNFIKDSVYV 173
>Z81514-5|CAB04192.2| 611|Caenorhabditis elegans Hypothetical
protein F26F2.6 protein.
Length = 611
Score = 28.3 bits (60), Expect = 6.8
Identities = 9/39 (23%), Positives = 23/39 (58%)
Frame = +1
Query: 559 LQITRAAEHLYSIIDGKPKEVLGTTYLRIKEIVSTVHEC 675
L + + + +IDG+P +++ +T +++K+ V +C
Sbjct: 14 LAAQKGPSYKFGVIDGEPIDLINSTSVQVKDFDECVEKC 52
>L11247-4|AAK84520.1| 392|Caenorhabditis elegans Hypothetical
protein F09G8.3 protein.
Length = 392
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/52 (25%), Positives = 28/52 (53%)
Frame = +3
Query: 39 SAANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGK 194
S+ S PAS+ D DT +R+I +E +++ ++ + + +R + G+
Sbjct: 9 SSRAMSSASPASASDSDTSVRKIGKALETYLKHSQQHVAMMEKHRAEFETGR 60
>AF016424-2|AAB65332.1| 720|Caenorhabditis elegans Peroxisome
assembly factor protein6 protein.
Length = 720
Score = 27.9 bits (59), Expect = 9.0
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Frame = -1
Query: 498 SSKIFKSSSVNLAAPFVPFM-KSVLASALPICI--------RQSRISKTSFILLVSAA*R 346
S+ ++++S+V+ + PF F+ K+ L S++ + Q ISK + +LLV+ A
Sbjct: 209 STAVYETSAVSQSLPFSNFLLKNSLTSSMRTTVFRMTQIYSAQKTISKKALVLLVTGASG 268
Query: 345 TQASFLACFFASRSEEIAIAVTCFERSLAN 256
+ ++ FAS + V +E N
Sbjct: 269 SGKRLMSRVFASETHRNFFEVDGYEMVCEN 298
>AB012224-1|BAA76440.1| 720|Caenorhabditis elegans Pex6p homolog
protein.
Length = 720
Score = 27.9 bits (59), Expect = 9.0
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Frame = -1
Query: 498 SSKIFKSSSVNLAAPFVPFM-KSVLASALPICI--------RQSRISKTSFILLVSAA*R 346
S+ ++++S+V+ + PF F+ K+ L S++ + Q ISK + +LLV+ A
Sbjct: 209 STAVYETSAVSQSLPFSNFLLKNSLTSSMRTTVFRMTQIYSAQKTISKKALVLLVTGASG 268
Query: 345 TQASFLACFFASRSEEIAIAVTCFERSLAN 256
+ ++ FAS + V +E N
Sbjct: 269 SGKRLMSRVFASETHRNFFEVDGYEMVCEN 298
>AB010968-1|BAA33544.1| 720|Caenorhabditis elegans PEX6 protein.
Length = 720
Score = 27.9 bits (59), Expect = 9.0
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Frame = -1
Query: 498 SSKIFKSSSVNLAAPFVPFM-KSVLASALPICI--------RQSRISKTSFILLVSAA*R 346
S+ ++++S+V+ + PF F+ K+ L S++ + Q ISK + +LLV+ A
Sbjct: 209 STAVYETSAVSQSLPFSNFLLKNSLTSSMRTTVFRMTQIYSAQKTISKKALVLLVTGASG 268
Query: 345 TQASFLACFFASRSEEIAIAVTCFERSLAN 256
+ ++ FAS + V +E N
Sbjct: 269 SGKRLMSRVFASETHRNFFEVDGYEMVCEN 298
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,450,736
Number of Sequences: 27780
Number of extensions: 307725
Number of successful extensions: 739
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -