Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021704
         (804 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17910.1 68418.m02100 expressed protein                             31   1.2  
At3g55990.1 68416.m06221 expressed protein contains Pfam profile...    30   1.6  
At1g11400.2 68414.m01310 expressed protein                             29   4.8  
At1g11400.1 68414.m01309 expressed protein                             29   4.8  
At5g27330.1 68418.m03263 expressed protein                             28   6.3  
At4g20450.1 68417.m02984 leucine-rich repeat protein kinase, put...    28   8.3  
At3g06670.1 68416.m00786 expressed protein                             28   8.3  
At1g71150.1 68414.m08210 expressed protein  ; expression support...    28   8.3  

>At5g17910.1 68418.m02100 expressed protein
          Length = 1342

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 99  RQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVA 245
           RQ+  + E K+ ++   +S  T   D +K   E N+D++  +AK D V+
Sbjct: 524 RQLSEVSESKVSSIPDTESVCTVLEDDEKKVDENNADRETKIAKVDMVS 572


>At3g55990.1 68416.m06221 expressed protein contains Pfam profile
           PF03005: Arabidopsis proteins of unknown function
          Length = 487

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +3

Query: 57  SEKPASSEDKDTPIRQIMTI-IEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKY 233
           + KP    D+ TPI +I T+ ++  I+N +  +  + +   +Q + K++    +  V+K 
Sbjct: 56  TSKPHDVHDEATPITEITTLPVQESIKNSDPIQESIKNADSVQDSVKDVAEPVQEEVSKT 115

Query: 234 DEV 242
           +EV
Sbjct: 116 EEV 118


>At1g11400.2 68414.m01310 expressed protein
          Length = 204

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +3

Query: 117 IEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTL 254
           +E +IR L K+K +LT  +  + A ++LN +Q    +K +E  Q L
Sbjct: 152 VEKRIRAL-KKKIRLTEAQQQKTASRDLNPEQLEKFSKLEEWRQEL 196


>At1g11400.1 68414.m01309 expressed protein
          Length = 204

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +3

Query: 117 IEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTL 254
           +E +IR L K+K +LT  +  + A ++LN +Q    +K +E  Q L
Sbjct: 152 VEKRIRAL-KKKIRLTEAQQQKTASRDLNPEQLEKFSKLEEWRQEL 196


>At5g27330.1 68418.m03263 expressed protein
          Length = 628

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +3

Query: 81  DKDTPIRQIMTIIEHKIRNLEKRK---SKLTSYRDLQKAGKELNSDQ 212
           D++T IR +       IR LE  +   S++   RDL K+G +L S++
Sbjct: 141 DRETEIRDLKREANGLIRKLESEREEFSRVCDERDLVKSGFDLQSEE 187


>At4g20450.1 68417.m02984 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 898

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = -1

Query: 432 VLASALPICIRQSRISKTSFILL--VSAA*RTQASFLACFFASRSEEIAIAVTCFERSLA 259
           +LASA  + I  + +   + +LL     +  +++S +A   +   EE+A+    FER L 
Sbjct: 539 ILASAASVGIIIAVLLLVNILLLRKKKPSKASRSSMVANKRSYTYEEVAVITNNFERPLG 598

Query: 258 N*GFGQLHH 232
             GFG ++H
Sbjct: 599 EGGFGVVYH 607


>At3g06670.1 68416.m00786 expressed protein
          Length = 865

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/72 (26%), Positives = 29/72 (40%)
 Frame = +3

Query: 39  SAANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKV 218
           SA+N + EKPAS+  K+ P   +   +     +   R   L  Y D +         +K 
Sbjct: 672 SASNTQKEKPASNIQKEQPKPHLSNGVAASPTSSSPRSGGLVDYEDDEDDEDYKPPPRKQ 731

Query: 219 AVAKYDEVAQTL 254
             A  DE  + L
Sbjct: 732 PEASEDEEGELL 743


>At1g71150.1 68414.m08210 expressed protein  ; expression supported
           by MPSS
          Length = 351

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 45  ANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKR 149
           ++ KS K +SSE      R++ ++IEH +  L+ R
Sbjct: 303 SDVKSSKNSSSEALSGSCRRLQSLIEHMVTELDTR 337


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,367,331
Number of Sequences: 28952
Number of extensions: 275129
Number of successful extensions: 662
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)