Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021703
(725 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 36 0.004
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 36 0.006
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 35 0.014
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 33 0.042
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 31 0.13
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 31 0.13
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 31 0.17
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 31 0.22
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 30 0.29
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 30 0.39
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 30 0.39
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 29 0.51
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 29 0.51
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 29 0.68
SPAC750.06c |||S. pombe specific DUF999 protein family 4|Schizos... 29 0.68
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 29 0.89
SPAC212.01c |||S. pombe specific DUF999 family protein 2|Schizos... 28 1.2
SPBCPT2R1.04c |||S. pombe specific DUF999 protein family 10|Schi... 28 1.2
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 28 1.2
SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein fa... 28 1.2
SPBC1348.01 |||S. pombe specific DUF999 protein family 5|Schizos... 28 1.2
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 28 1.2
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 27 2.7
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 27 3.6
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox... 26 4.8
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 26 4.8
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 26 6.3
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 26 6.3
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 25 8.3
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 25 8.3
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 36.3 bits (80), Expect = 0.004
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 5/46 (10%)
Frame = +3
Query: 603 LLPFQEDGVRFGIAR---HGRCMIADDMGLGKTYQALAIAS--YYR 725
L+P+Q G+ + R H C++AD+MGLGKT Q ++ S +YR
Sbjct: 556 LMPYQLKGLNWLYLRWYTHHPCILADEMGLGKTVQVISFISVLFYR 601
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 35.9 bits (79), Expect = 0.006
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = +3
Query: 540 EQTVDPKNIDLMPIESTIRQKLLPFQEDGVRF-----GIARHGRCMIADDMGLGKTYQAL 704
EQ ++P ++ I I L +Q++GV + HG ++ DDMGLGKT Q +
Sbjct: 1337 EQMLNPSKVEAFSIPVPISADLRKYQQEGVNWLAFLNKYELHG--ILCDDMGLGKTLQTI 1394
Query: 705 AIAS 716
I +
Sbjct: 1395 CIVA 1398
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 34.7 bits (76), Expect = 0.014
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Frame = +3
Query: 519 YVLKILKEQTVDPKNIDLMPIESTIRQKLLPFQEDGV----RFGIARHGRCMIADDMGLG 686
+V + L+E+ P+ + + + LLPFQ +GV R + G ++AD+MG+G
Sbjct: 331 HVWEKLEEEA--PREVKQIEQPKELVLNLLPFQREGVYWLKRQEDSSFGGGILADEMGMG 388
Query: 687 KTYQALAI 710
KT Q +A+
Sbjct: 389 KTIQTIAL 396
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 33.1 bits (72), Expect = 0.042
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 9/71 (12%)
Frame = +3
Query: 525 LKILKEQTVDPK-NIDLMPIESTIRQKLLPFQEDGVRFG----IARHGRC----MIADDM 677
L + + +T DP+ ++D++ I+ + + L Q +GV F + G+C ++AD+M
Sbjct: 179 LVMSRPKTWDPRTHVDVV-IDPFLSKHLYSHQREGVSFLYDCLLGMEGKCGYSAILADEM 237
Query: 678 GLGKTYQALAI 710
GLGKT Q + +
Sbjct: 238 GLGKTLQTITV 248
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 31.5 bits (68), Expect = 0.13
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = +3
Query: 660 MIADDMGLGKTYQALAI 710
++ADDMGLGKT QALA+
Sbjct: 413 ILADDMGLGKTVQALAL 429
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 31.5 bits (68), Expect = 0.13
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Frame = +3
Query: 603 LLPFQEDGVRF--GIARHGRC--MIADDMGLGKTYQALAI 710
LLP Q +G + + + +C ++ADDMGLGKT Q +A+
Sbjct: 250 LLPHQVEGHAWMESMEQSSKCGGVMADDMGLGKTIQTIAL 289
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 31.1 bits (67), Expect = 0.17
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 8/52 (15%)
Frame = +3
Query: 579 IESTIRQKLLPFQEDGVRF-------GIARHGR-CMIADDMGLGKTYQALAI 710
I+ + + L P Q +GV+F I R C++AD+MGLGKT Q +A+
Sbjct: 256 IDPKLARILRPHQIEGVKFLYKCVTGRIDRCANGCIMADEMGLGKTLQCIAL 307
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 30.7 bits (66), Expect = 0.22
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -3
Query: 105 ILNVSNIQKIVSNVDSGTVDQMLFSIHFILNFRV 4
IL+ S +QKI+++V +G M+F + F+ N R+
Sbjct: 564 ILSYSEVQKILTSVATGFAGAMIFPVWFVANPRL 597
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 30.3 bits (65), Expect = 0.29
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 660 MIADDMGLGKTYQALAIASY 719
++AD+MGLGKT Q +A SY
Sbjct: 397 ILADEMGLGKTVQTVAFLSY 416
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 29.9 bits (64), Expect = 0.39
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = +3
Query: 594 RQKLLPFQEDGVRFGIARHG---RCMIADDMGLGKTYQALAIASY 719
R L +Q+ G+ + A H ++AD+MGLGKT Q +A+ ++
Sbjct: 444 RGTLREYQQYGLEWLTALHDSNTNGILADEMGLGKTIQTIALLAH 488
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 29.9 bits (64), Expect = 0.39
Identities = 10/20 (50%), Positives = 18/20 (90%)
Frame = +3
Query: 660 MIADDMGLGKTYQALAIASY 719
++AD+MGLGKT Q++++ +Y
Sbjct: 864 ILADEMGLGKTVQSISVMAY 883
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 29.5 bits (63), Expect = 0.51
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 660 MIADDMGLGKTYQALAIASY 719
++AD+MGLGKT Q +A +Y
Sbjct: 891 ILADEMGLGKTIQTIAFITY 910
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 29.5 bits (63), Expect = 0.51
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Frame = +3
Query: 600 KLLPFQEDGVRFGIA---RHGRCMIADDMGLGKTYQALAIASY 719
KL +Q G+++ I+ H ++AD+MGLGKT Q +++ ++
Sbjct: 416 KLKEYQLRGLQWMISLYNNHLNGILADEMGLGKTIQTISLITH 458
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 29.1 bits (62), Expect = 0.68
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 645 RHGRCMIADDMGLGKTYQALAIASY 719
R+ ++AD+MGLGKT Q + SY
Sbjct: 407 RNENGILADEMGLGKTVQTVCFLSY 431
>SPAC750.06c |||S. pombe specific DUF999 protein family
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 29.1 bits (62), Expect = 0.68
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 107 LCSKEEIEKKRLSALHKRQNKISNTSTSPLNKLNRKTCPLRDNLQKNLPF 256
LC E++ K+ + RQ+ +NT +K+N KT +++ L N PF
Sbjct: 36 LCKPEKVNKQSQRSRQSRQSLFTNTIKPQKDKMNIKTNKIKEFL--NDPF 83
>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 28.7 bits (61), Expect = 0.89
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +3
Query: 660 MIADDMGLGKTYQALAI 710
++ADDMGLGKT Q +A+
Sbjct: 259 ILADDMGLGKTIQMIAL 275
>SPAC212.01c |||S. pombe specific DUF999 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 107 LCSKEEIEKKRLSALHKRQNKISNTSTSPLNKLNRKTCPLRDNL 238
LC E++ K+ + RQ+ +NT +K+N KT +++ L
Sbjct: 36 LCKPEKVNKQSQRSRQSRQSLFTNTIKPQKDKMNIKTNKIKEFL 79
>SPBCPT2R1.04c |||S. pombe specific DUF999 protein family
10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 280
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 107 LCSKEEIEKKRLSALHKRQNKISNTSTSPLNKLNRKTCPLRDNL 238
LC E++ K+ + RQ+ +NT +K+N KT +++ L
Sbjct: 36 LCKPEKVNKQSQRSRQSRQSLFTNTIKPQKDKMNIKTNKIKEFL 79
>SPAC212.04c |||S. pombe specific DUF999 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 107 LCSKEEIEKKRLSALHKRQNKISNTSTSPLNKLNRKTCPLRDNL 238
LC E++ K+ + RQ+ +NT +K+N KT +++ L
Sbjct: 36 LCKPEKVNKQSQRSRQSRQSLFTNTIKPQKDKMNIKTNKIKEFL 79
>SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein
family 9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 107 LCSKEEIEKKRLSALHKRQNKISNTSTSPLNKLNRKTCPLRDNL 238
LC E++ K+ + RQ+ +NT +K+N KT +++ L
Sbjct: 36 LCKPEKVNKQSQRSRQSRQSLFTNTIKPQKDKMNIKTNKIKEFL 79
>SPBC1348.01 |||S. pombe specific DUF999 protein family
5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 107 LCSKEEIEKKRLSALHKRQNKISNTSTSPLNKLNRKTCPLRDNL 238
LC E++ K+ + RQ+ +NT +K+N KT +++ L
Sbjct: 36 LCKPEKVNKQSQRSRQSRQSLFTNTIKPQKDKMNIKTNKIKEFL 79
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/74 (24%), Positives = 32/74 (43%)
Frame = +1
Query: 262 PRSDQTTQNVPVTKVVTGNVYLISEDRFEVNPSEFCAPLINIFKTIPSRIYADKTKLWNF 441
P S T QN+P +++ L S +E FC + + K S + ++ ++ +
Sbjct: 420 PASSATKQNIPSRLIISPQFALGSVLEYENQRRAFCDEVATLLKEKNSSVSSESLEVLSN 479
Query: 442 SIEDYNQLMSKVAP 483
I + L S V P
Sbjct: 480 WIVSVDNLESPVDP 493
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 660 MIADDMGLGKTYQALAIAS 716
++AD+MGLGKT Q +A S
Sbjct: 409 ILADEMGLGKTCQTIAFFS 427
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 26.6 bits (56), Expect = 3.6
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -2
Query: 613 NGNNFCL-IVDSIGIKSMFFGSTVCSFNIFKTYGGMHQAQHEELMEQL*TLTDCSLLLK 440
NGN+F + +I + ++F GS +++I + + EE+MEQ+ T S+ K
Sbjct: 810 NGNSFLSKVFITITMLTLFLGSKANNWDINFSDDDLKLMNEEEIMEQIETFKAWSMKFK 868
>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
Etp1/ cytochrome oxidase cofactor Cox15,
fusion|Schizosaccharomyces pombe|chr 1|||Manual
Length = 631
Score = 26.2 bits (55), Expect = 4.8
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -1
Query: 485 NGATLDIN*L*SSIEKFHNFVLSAYILDGIVLNIFISGAQNSDGFTSNLSSDIKY-TFP 312
+G+T + + SS++K F S G+VL +SGA F + L + + Y TFP
Sbjct: 286 SGSTSQLTSMVSSVQKMKGFRTSVNSFVGLVLITLLSGA-----FVAGLDAGMIYCTFP 339
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 648 HGRCMIADDMGLGKTYQALAI 710
H ++AD+MGLGKT + L++
Sbjct: 522 HRGGILADEMGLGKTIEVLSL 542
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.8 bits (54), Expect = 6.3
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = +3
Query: 660 MIADDMGLGKTYQALAIASYYR 725
++AD+MG+GKT + L + +++
Sbjct: 287 ILADEMGMGKTLEVLGLVLHHQ 308
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +3
Query: 660 MIADDMGLGKTYQALA 707
++AD+MGLGKT Q +A
Sbjct: 572 ILADEMGLGKTCQVVA 587
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/29 (31%), Positives = 22/29 (75%)
Frame = +2
Query: 116 KEEIEKKRLSALHKRQNKISNTSTSPLNK 202
K+E + ++L+++ + +NK ++ + +PLNK
Sbjct: 199 KKEEKARKLASMLESENKDNDANAAPLNK 227
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +2
Query: 53 VPESTLDTIF*IFDTFKMLCSKEEIEKKRLSALHKRQNKISN 178
V +S+ T F F+ K + SKE++E + + L + +K+SN
Sbjct: 204 VVQSSPQTNFENFEFPKKIPSKEDLETREVLLLPPQTSKLSN 245
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,065,589
Number of Sequences: 5004
Number of extensions: 65858
Number of successful extensions: 220
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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