Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021703
(725 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1147 + 24349811-24350161,24351031-24351366,24353260-243533... 69 4e-12
07_03_1410 + 26363538-26363777,26365421-26365475,26365553-263656... 58 5e-09
05_03_0142 - 8866316-8866608,8867652-8867886,8868801-8869076,886... 40 0.003
01_06_0006 - 25517892-25517935,25518156-25518276,25518598-255187... 36 0.033
04_04_0822 + 28352941-28353825,28353863-28354016,28354714-283547... 36 0.043
02_05_0844 - 32144417-32144764,32145588-32145686,32146218-321464... 36 0.043
02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,329... 36 0.043
04_04_1704 - 35481041-35481461,35481682-35481810,35482291-354823... 33 0.23
05_01_0318 - 2488529-2489196,2489773-2490372,2490620-2490773,249... 33 0.31
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 32 0.53
06_01_0584 - 4178391-4178732,4178854-4178915,4180361-4180481,418... 31 1.2
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739... 30 1.6
01_04_0010 - 15058175-15058195,15058320-15058430,15059031-150592... 29 2.8
05_01_0360 + 2814139-2814627,2815203-2815334,2815480-2815583,281... 29 3.8
03_02_1012 + 13207907-13207990,13209196-13209280,13209402-132101... 29 3.8
02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75... 29 3.8
01_01_0020 + 147147-147313,148450-148548,148634-148742,148856-14... 28 6.6
07_01_1079 + 9770444-9772756 28 8.7
04_01_0586 - 7619541-7620656 28 8.7
>07_03_1147 +
24349811-24350161,24351031-24351366,24353260-24353376,
24353585-24353647,24354066-24354139,24354216-24354306,
24354791-24354850,24355270-24355462,24356242-24356522,
24357435-24357536,24357664-24357774,24358410-24358475,
24358562-24358660,24358757-24358788,24359171-24359274,
24359380-24359507,24359625-24359756,24360051-24360359,
24360887-24361071,24361161-24361263,24361407-24361552,
24361748-24361827,24361901-24362103
Length = 1121
Score = 68.9 bits (161), Expect = 4e-12
Identities = 32/65 (49%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Frame = +3
Query: 528 KILKEQTVDPKNID--LMPIESTIRQKLLPFQEDGVRFGIARHGRCMIADDMGLGKTYQA 701
K E K +D LM + +R LLPFQ +GV+FG+ RHGRC+IAD+MGLGKT Q
Sbjct: 171 KFFAESCASDKEVDGLLMKLPQHLRDALLPFQLEGVKFGLRRHGRCLIADEMGLGKTLQH 230
Query: 702 LAIAS 716
++ S
Sbjct: 231 FSLLS 235
>07_03_1410 +
26363538-26363777,26365421-26365475,26365553-26365644,
26365732-26365787,26366026-26366101,26366790-26366856,
26367197-26367263,26368276-26368342,26368759-26368842,
26369749-26369904,26370641-26370718,26371323-26371391,
26371476-26371541,26371623-26371751,26372862-26372951,
26373306-26373371,26373768-26373836,26373903-26374007,
26374374-26374499,26374687-26374745,26374832-26374868,
26375370-26375519
Length = 667
Score = 58.4 bits (135), Expect = 5e-09
Identities = 25/46 (54%), Positives = 34/46 (73%)
Frame = +3
Query: 579 IESTIRQKLLPFQEDGVRFGIARHGRCMIADDMGLGKTYQALAIAS 716
I + + KL+PFQ +GVRF + R +IAD+MGLGKT QA+A+AS
Sbjct: 201 IPTDVESKLMPFQREGVRFALQHGARTLIADEMGLGKTLQAIAVAS 246
>05_03_0142 -
8866316-8866608,8867652-8867886,8868801-8869076,
8869166-8869292,8869869-8870116,8870189-8871104,
8871980-8872086,8872562-8872930
Length = 856
Score = 39.5 bits (88), Expect = 0.003
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Frame = +3
Query: 555 PKNIDLMPIESTIRQKLLPFQEDGVRF--GIAR--HGRCMIADDMGLGKTYQALAIAS 716
P ++ + S+I +LL Q DGVRF + R HG ++ DDMGLGKT Q +A S
Sbjct: 116 PGERPVVQVPSSINCRLLVHQRDGVRFLYNLYRNNHGG-VLGDDMGLGKTIQTIAFLS 172
>01_06_0006 -
25517892-25517935,25518156-25518276,25518598-25518733,
25519189-25519280,25519358-25519426,25519710-25519821,
25519897-25520015,25520302-25520355,25520811-25520891,
25520968-25521051,25521124-25521315,25521633-25521746,
25521832-25521978,25522066-25522302,25522762-25522810,
25522894-25523027,25523124-25523324,25523532-25523701,
25523773-25523875,25524198-25524361,25525015-25525055,
25525144-25525187
Length = 835
Score = 35.9 bits (79), Expect = 0.033
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Frame = +3
Query: 579 IESTIRQKLLPFQEDGV----RFGIARHGRCMIADDMGLGKTYQALA 707
+ S I L P Q+DG+ R + G ++ADDMGLGKT QA A
Sbjct: 198 LPSEIFSSLFPHQKDGLEWLWRLHCEKSGGGILADDMGLGKTRQASA 244
>04_04_0822 +
28352941-28353825,28353863-28354016,28354714-28354754,
28355060-28355310,28355411-28355591,28356138-28356323,
28356396-28356569,28356992-28357150,28357424-28357501,
28357612-28357748,28357980-28358044,28358115-28358148,
28358216-28358372,28359135-28359196,28360041-28360118,
28360940-28361042
Length = 914
Score = 35.5 bits (78), Expect = 0.043
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +3
Query: 582 ESTIRQKLLPFQEDGVRFGIARH----GRCMIADDMGLGKTYQALAIASYYR 725
ES L P+Q GV F + H G ++AD+MGLGKT QA+ + R
Sbjct: 318 ESEFEPILKPYQLVGVNFLLLLHRKNIGGAILADEMGLGKTVQAVTYLTLLR 369
>02_05_0844 -
32144417-32144764,32145588-32145686,32146218-32146410,
32147049-32147107,32147189-32147263,32147557-32147670,
32147776-32147895,32148204-32148216,32148421-32148512,
32149078-32149164,32149254-32149328,32149630-32149680,
32149852-32149947,32150135-32150221,32150312-32150368,
32150475-32150600,32150709-32150949,32151028-32151114,
32151260-32151637,32152847-32153187
Length = 912
Score = 35.5 bits (78), Expect = 0.043
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Frame = +3
Query: 510 IPPYVLKILKEQTVDPKNIDLMPIESTIRQKLLPFQEDGVRF------GIARH---GRCM 662
I P +L + + + N + ++ + + L P Q +GV+F G+ C+
Sbjct: 204 IEPLILWQPEGRDKENSNFSAIKVDHLLVRYLRPHQREGVQFMFDCVSGLLNDDGISGCI 263
Query: 663 IADDMGLGKTYQALAI 710
+ADDMGLGKT Q++ +
Sbjct: 264 LADDMGLGKTLQSITL 279
>02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,
3299528-3299531,3299814-3299949,3300034-3300090,
3301689-3301786,3301876-3301947,3302056-3302228,
3302552-3302698,3303113-3303336,3305300-3305306,
3305634-3305800,3306033-3306068,3306787-3307004,
3307115-3307172,3307761-3307842,3308045-3308207,
3308594-3308598,3308700-3308885,3308969-3309548,
3309642-3309774,3309880-3309948,3310184-3310395,
3310654-3310891,3311228-3311386,3311501-3311926,
3312010-3312447,3312593-3312712,3312784-3313266,
3313471-3314009,3314178-3314667,3314836-3314904,
3315735-3315839,3315940-3316158,3316254-3316508,
3316602-3316651,3317175-3317284,3317372-3317454,
3317560-3317772,3317870-3318040
Length = 2391
Score = 35.5 bits (78), Expect = 0.043
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +3
Query: 540 EQTVDPKNIDLMPIESTIRQKLLPFQEDGVRF-GIARHGRC--MIADDMGLGKTYQALAI 710
EQ +D ID + + +L +Q++G+ + R + ++ DDMGLGKT QA AI
Sbjct: 1781 EQLLDNSQIDDYKLSIDLSVELRRYQQEGINWLAFLRRFKLHGILCDDMGLGKTLQASAI 1840
Query: 711 AS 716
+
Sbjct: 1841 VA 1842
>04_04_1704 - 35481041-35481461,35481682-35481810,35482291-35482397,
35482515-35482583,35482825-35482936,35483013-35483131,
35483211-35483291,35483629-35483700,35484039-35484239,
35484442-35484528,35485284-35485523,35485991-35486455,
35487434-35487556,35487643-35487769,35487851-35487919,
35488061-35488189,35488628-35488722,35488808-35488876,
35489332-35489443,35489545-35489663,35489753-35489833,
35490898-35490969,35491052-35491267,35491524-35491601,
35491694-35491831,35492403-35492414,35492639-35492872,
35493076-35493130,35493222-35493352,35493813-35494546,
35494613-35494820
Length = 1634
Score = 33.1 bits (72), Expect = 0.23
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +3
Query: 573 MPIESTIRQKLLPFQEDGVRFGIARHGRC---MIADDMGLGKTYQ--ALAIASYY 722
M I + L P Q DG+ + A H ++ADDMGLGKT Q + + SY+
Sbjct: 1045 MKIPRRVLGSLYPHQRDGLAWLWALHCTATGGILADDMGLGKTIQEGGILLTSYH 1099
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +3
Query: 603 LLPFQEDGVRFGIARHGRC---MIADDMGLGKTYQALA 707
L P Q +G+R+ H R ++ DDMGLGKT Q A
Sbjct: 280 LYPHQREGLRWLWVLHCRGTGGILGDDMGLGKTMQVSA 317
>05_01_0318 -
2488529-2489196,2489773-2490372,2490620-2490773,
2490996-2491085,2491926-2492061,2492159-2492418,
2493448-2493846,2494482-2494661,2494728-2494922,
2496614-2496678,2497186-2497321,2497442-2497483,
2498351-2498689
Length = 1087
Score = 32.7 bits (71), Expect = 0.31
Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = +3
Query: 600 KLLPFQEDGVRFGIARHGRCM---IADDMGLGKTYQALAIASY 719
+L P+Q +G+++ ++ + +AD+MGLGKT Q +A+ +Y
Sbjct: 464 ELRPYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAY 506
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 31.9 bits (69), Expect = 0.53
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Frame = +3
Query: 600 KLLPFQEDGVRFGIARHGRCM---IADDMGLGKTYQALAIASY 719
KL +Q +G+R+ ++ + + +AD+MGLGKT Q +++ Y
Sbjct: 1027 KLREYQMNGLRWLVSLYNNNLNGILADEMGLGKTVQVISLLCY 1069
>06_01_0584 -
4178391-4178732,4178854-4178915,4180361-4180481,
4180592-4180732,4180830-4180959,4182306-4182436,
4182528-4182601,4182680-4182741,4183135-4183209,
4184658-4184760,4184835-4184991,4185549-4185743,
4186204-4186282,4186697-4186806,4187249-4187374,
4187475-4187541,4187622-4187791,4187880-4188018,
4188361-4188522,4188672-4188772,4188852-4188994,
4189438-4189537,4190364-4190414,4191062-4191169,
4191279-4191494,4191585-4191721,4191820-4191915,
4192017-4192234,4192764-4192925,4193006-4193163,
4194221-4194379
Length = 1364
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Frame = +3
Query: 603 LLPFQEDGV---RFGIARHGRCMIADDMGLGKTYQALA 707
L P+Q +G+ R+ + R ++ D+MGLGKT Q++A
Sbjct: 235 LHPYQLEGLNFLRYSWYHNKRVILGDEMGLGKTIQSIA 272
>07_03_1567 -
27772815-27773302,27773471-27773561,27773641-27773988,
27774929-27775110,27775191-27775368,27775453-27775605,
27775993-27776232,27776369-27776449,27776485-27776730,
27777151-27777240,27777536-27777778,27778365-27778529,
27779017-27779080,27779162-27779286,27779383-27779476,
27779647-27779714,27779798-27779989,27780618-27780752,
27780847-27780934,27781014-27781107,27781484-27781547,
27781657-27781708,27781911-27782014,27782099-27782158,
27782687-27782770,27782892-27783125,27783442-27783864,
27784675-27784736,27784867-27785521
Length = 1700
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Frame = +3
Query: 600 KLLPFQEDGVRF---GIARHGRCMIADDMGLGKTYQALAIASY 719
KL +Q +G+ F G ++AD+MGLGKT Q++++ +
Sbjct: 596 KLRDYQLEGLNFLVNGWRNDTNVILADEMGLGKTIQSVSMLGF 638
>01_04_0010 -
15058175-15058195,15058320-15058430,15059031-15059246,
15059327-15059505,15059655-15059820,15059914-15059972,
15060065-15060107,15060285-15060354,15060458-15060547,
15060621-15060742,15060777-15060808,15060876-15061064,
15061148-15061241,15061325-15061412,15061498-15061718,
15061924-15061997,15062081-15062363,15062455-15062589,
15062721-15062942,15063029-15063208,15063305-15063402,
15063522-15063634,15064156-15064259,15064400-15064522,
15064857-15065192
Length = 1122
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +3
Query: 570 LMPIESTIRQKLLPFQEDGVRFGIARHGRCM---IADDMGLGKTYQALAIASY 719
L+ S I+ K+ +Q G+ + I + + +AD+MGLGKT Q +++ Y
Sbjct: 220 LLSQPSCIKGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGY 272
>05_01_0360 +
2814139-2814627,2815203-2815334,2815480-2815583,
2816180-2816292,2818409-2818506,2818636-2818815,
2818893-2819114,2819270-2819404,2819489-2819771,
2819858-2819931,2820164-2820384,2820463-2820550,
2820651-2820744,2820827-2821015,2821369-2821400,
2821542-2821621,2821718-2821807,2821911-2821980,
2822240-2822285,2822370-2822428,2822588-2822753,
2822929-2823107,2823186-2823392,2823529-2823633,
2823701-2823703
Length = 1152
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +3
Query: 585 STIRQKLLPFQEDGVRFGIARHGRCM---IADDMGLGKTYQALAIASY 719
S I+ K+ +Q G+ + I + + +AD+MGLGKT Q +++ Y
Sbjct: 279 SCIKGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGY 326
>03_02_1012 +
13207907-13207990,13209196-13209280,13209402-13210186,
13210262-13210462,13210580-13210690,13211105-13211487,
13211594-13211702,13211786-13211866,13212088-13212156,
13212379-13212467,13212619-13212780,13212859-13212916,
13213143-13213373,13213516-13213662,13213779-13214333,
13214562-13214819,13215096-13215203,13215760-13215854,
13215946-13216102,13216466-13216666,13217542-13217670,
13218292-13218567
Length = 1457
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +3
Query: 660 MIADDMGLGKTYQALAIASY 719
++AD+MGLGKT QA+A ++
Sbjct: 591 ILADEMGLGKTVQAMAFLAH 610
>02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-751889,
752025-753905,754093-754296,754807-754899,755036-755122,
755241-755328,755533-755645,755943-757259,757398-758672,
759166-759273
Length = 2233
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = +3
Query: 660 MIADDMGLGKTYQALAIASY 719
++AD+MGLGKT Q +++ +Y
Sbjct: 984 ILADEMGLGKTVQVMSLIAY 1003
>01_01_0020 +
147147-147313,148450-148548,148634-148742,148856-148927,
149056-149061,150811-150915,151048-151539,151629-152025,
152178-153646,154010-154450,154543-155214
Length = 1342
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +3
Query: 579 IESTIRQKLLPFQEDGVRFGIARHGRC---MIADDMGLGKTYQALA 707
I T+ +L +Q+ GV++ H + +I D+MGLGKT Q L+
Sbjct: 519 IPGTLYTQLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTVQVLS 564
>07_01_1079 + 9770444-9772756
Length = 770
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = +2
Query: 86 IFDTFKMLCSKEEIEKKRLSALHKRQNKISNTSTSPLNKLNRKT 217
+++TF +L +KE++ LSAL ++QN ++ + K ++T
Sbjct: 258 LYETFDLLYTKEKMFPIILSALKRQQNYVNTNVDTDEGKKEQET 301
>04_01_0586 - 7619541-7620656
Length = 371
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = +2
Query: 152 HKRQNKISNTSTSPLNKLNRKTCPLRD--NLQKNLPF*HQD 268
H N ISNT+ + N +CP D N N+ HQD
Sbjct: 291 HNADNNISNTNDDDVTTNNHASCPNSDHSNQACNVNIIHQD 331
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,284,877
Number of Sequences: 37544
Number of extensions: 361861
Number of successful extensions: 778
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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