Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021703
         (725 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51562| Best HMM Match : HARP (HMM E-Value=0.00049)                  66   4e-11
SB_35930| Best HMM Match : SNF2_N (HMM E-Value=1.3004e-42)             37   0.019
SB_22405| Best HMM Match : SNF2_N (HMM E-Value=0)                      34   0.13 
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)                      33   0.18 
SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0)                      33   0.24 
SB_10642| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.31 
SB_7325| Best HMM Match : SNF2_N (HMM E-Value=8.9e-32)                 33   0.31 
SB_21827| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.54 
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.72 
SB_33711| Best HMM Match : PSCyt1 (HMM E-Value=9)                      31   1.3  
SB_6588| Best HMM Match : 7tm_1 (HMM E-Value=0)                        30   1.7  
SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)                        30   1.7  
SB_38918| Best HMM Match : DUF997 (HMM E-Value=2.3)                    29   2.9  
SB_46817| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_46754| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-29)               29   3.8  
SB_10733| Best HMM Match : Peptidase_A16_N (HMM E-Value=3.4)           28   6.7  
SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)                      28   8.9  
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   8.9  

>SB_51562| Best HMM Match : HARP (HMM E-Value=0.00049)
          Length = 508

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 28/61 (45%), Positives = 45/61 (73%)
 Frame = +3

Query: 543 QTVDPKNIDLMPIESTIRQKLLPFQEDGVRFGIARHGRCMIADDMGLGKTYQALAIASYY 722
           +++  ++I+L  +++ +   L+PFQ +GV F I + GR +IADDMGLGKT QA+ +AS+Y
Sbjct: 387 KSLSSEDINLNCVDTKLVSSLMPFQREGVAFCICQDGRAIIADDMGLGKTVQAICVASFY 446

Query: 723 R 725
           R
Sbjct: 447 R 447



 Score = 37.9 bits (84), Expect = 0.008
 Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +1

Query: 292 PVT-KVVTGNVYLISEDRFEVNPSEFCAPLINIFKTIPSRIYADKTK 429
           PVT KV+ G   LIS  RF V    F A LI +FKT+PSR Y   ++
Sbjct: 315 PVTGKVIKGLCVLISSTRFTVKIG-FHAQLIALFKTLPSRAYVSASR 360


>SB_35930| Best HMM Match : SNF2_N (HMM E-Value=1.3004e-42)
          Length = 784

 Score = 36.7 bits (81), Expect = 0.019
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
 Frame = +3

Query: 555 PKNIDLMPIESTIRQKLLPFQEDGVRFGIARHGR----CMIADDMGLGKTYQALAIAS 716
           P    ++ + + I  +L  +Q +GV+F + +H R     ++ DDMGLGKT Q +A+ S
Sbjct: 126 PNEHPVIQVPAPINCRLRDYQREGVQF-LYQHYRSNNGAILGDDMGLGKTVQVIALLS 182


>SB_22405| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 764

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 8/70 (11%)
 Frame = +3

Query: 525 LKILKEQTVDPKNIDLMPIESTIRQKLLPFQEDGVRF------GIAR-HGR-CMIADDMG 680
           L++   ++V P  +D++ ++  + Q L P Q DGV F      G+   +G   ++AD+MG
Sbjct: 181 LELANNKSVQPL-VDVV-VDPHLGQHLRPHQRDGVLFLYECVMGLRNFNGNGAILADEMG 238

Query: 681 LGKTYQALAI 710
           LGKT Q +A+
Sbjct: 239 LGKTLQCIAL 248


>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 919

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +3

Query: 564 IDLMPIESTIRQKLLPFQEDGVRFGIARHGRCMIADDMGLGKTYQALAIASY 719
           I L+     ++ + L   E+  R   A+    ++AD+MGLGKT Q++A  SY
Sbjct: 70  ISLLVDARAMKMEALANAENAFRLQEAKGISGILADEMGLGKTVQSIAFLSY 121


>SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1478

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
 Frame = +3

Query: 513  PPYVLKILKEQTVDPKNIDLMPIESTIRQ--KLLPFQEDGVRF--GIARHG-RCMIADDM 677
            P +  K +  QT      ++ P++  +     L  +Q +GV +  G+  +G   ++AD+M
Sbjct: 781  PKHAPKEIAAQTRYINGEEVSPLQPVLLTGGALRSYQLEGVEWLKGLYENGVNGILADEM 840

Query: 678  GLGKTYQALAIASY 719
            GLGKT Q + + SY
Sbjct: 841  GLGKTIQCIGLVSY 854


>SB_10642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1023

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
 Frame = +3

Query: 600 KLLPFQEDGVRFGIARHGRCM---IADDMGLGKTYQALAIASY 719
           +L  +Q  G+ + ++ H   +   +AD+MGLGKT Q +A+ SY
Sbjct: 274 RLKEYQLAGLEWMVSLHNNNLNGILADEMGLGKTIQTIALFSY 316


>SB_7325| Best HMM Match : SNF2_N (HMM E-Value=8.9e-32)
          Length = 884

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
 Frame = +3

Query: 600 KLLPFQEDGVRFGIARHGRCM---IADDMGLGKTYQALAIASY 719
           +L  +Q  G+ + ++ H   +   +AD+MGLGKT Q +A+ SY
Sbjct: 705 RLKEYQLAGLEWMVSLHNNNLNGILADEMGLGKTIQTIALFSY 747


>SB_21827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
 Frame = +3

Query: 597 QKLLPFQEDGVRFGIARHGRCM---IADDMGLGKTYQALAIASY 719
           ++L P+Q  G+ + I  H + +   +AD+MGLGKT QA++  ++
Sbjct: 489 RQLKPYQLTGLNWLILMHEQGVNGILADEMGLGKTVQAISFIAH 532


>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1789

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
 Frame = +3

Query: 600 KLLPFQEDGV---RFGIARHGRCMIADDMGLGKTYQALA 707
           KL  +Q +G+   RF  A+    ++AD+MGLGKT Q ++
Sbjct: 637 KLHEYQREGLNWLRFSWAQGTNTILADEMGLGKTIQTIS 675


>SB_33711| Best HMM Match : PSCyt1 (HMM E-Value=9)
          Length = 103

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
 Frame = +3

Query: 603 LLPFQEDGVRF----GIARHGRCMIADDMGLGKTYQ 698
           L P+Q +GV +     +  HG C++ D+MGLGKT Q
Sbjct: 69  LRPYQLEGVGWMRDCALTGHG-CILGDEMGLGKTIQ 103


>SB_6588| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 355

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 26/99 (26%), Positives = 42/99 (42%)
 Frame = -1

Query: 344 NLSSDIKYTFPVTTLVTGTFWVVWSDLGVKMEGFSANYPLKDKFFYLIY*VD*WTCYLFY 165
           N  +DIK    +  ++ G F + W    V + GF+          Y +Y    WT YL  
Sbjct: 206 NYKTDIKAAKTIAVVI-GAFSICWLPFFVLIIGFAVRDDFITHKSYQVYRAIKWTHYL-- 262

Query: 164 FVSCVMQTGVFFLFPLLNTAF*TCQIFKKLYLTWTQGLW 48
             SC+       ++  LN  +   + FK+L+  W  GL+
Sbjct: 263 -NSCLNP----IIYCCLNRTY--RRAFKRLFARWKAGLF 294


>SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1432

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +3

Query: 600 KLLPFQEDGVRF---GIARHGRCMIADDMGLGKTYQALAIASY 719
           KL  +Q DG+ +      +    ++AD+MGLGKT Q ++  SY
Sbjct: 126 KLRDYQLDGLNWLANSWCKGYSIILADEMGLGKTIQVISFLSY 168


>SB_38918| Best HMM Match : DUF997 (HMM E-Value=2.3)
          Length = 860

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +2

Query: 107 LCSKEEIEKKRLSALHKRQNKISNTSTSP---LNKLNRKTCPLRDNLQKNLP 253
           L SK E E   L+A H+   K+SNTS+ P   +  +++   P+  NL K  P
Sbjct: 339 LTSKWEWEDLNLTATHRHDPKVSNTSSLPNGIITVMSKANTPV-INLPKESP 389


>SB_46817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 470

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +3

Query: 660 MIADDMGLGKTYQALAIASYYR 725
           ++AD+MGLGKT Q +++  Y +
Sbjct: 75  ILADEMGLGKTLQTISLLGYMK 96


>SB_46754| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-29)
          Length = 487

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 95  TFKMLCSKEEIEKKRLSALHKRQNKISNTSTSPLNKLNRKTCPLRD 232
           T  + C +EE+ KKR  A  +R+ K++   +S  ++  RK+   RD
Sbjct: 184 TLHLPCREEELRKKREEARKRREEKLAEKESSK-SRNKRKSKEQRD 228


>SB_10733| Best HMM Match : Peptidase_A16_N (HMM E-Value=3.4)
          Length = 197

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = +1

Query: 280 TQNVPVTKVVTGNVYLISEDRFEVNPSEFCAPLINIFKTIPSRIYADKTKLWNFSIEDYN 459
           T   PVTK V    YLI E R +++   F A      KTI    Y + + + N  I++  
Sbjct: 135 TNASPVTKFVYLKEYLIHEIRQDIDGLPFTAEGYEKAKTILKEEYGNSSDIINIYIKNIM 194

Query: 460 QL 465
            L
Sbjct: 195 DL 196


>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1918

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
 Frame = +3

Query: 591 IRQKLLPFQEDGVRFGIARHGRCM---IADDMGLGKTYQALAIASY 719
           +R  L  +Q  G+ + +  H + +   +AD+MGLGKT Q +++ ++
Sbjct: 780 LRGTLREYQLIGLDWLVTMHEKRLNGILADEMGLGKTIQTISLLAH 825


>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2437

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = -1

Query: 677 HVICYHTPT---VTSYAKSDTIFLKWQ*FLSDCRLYWH 573
           HV+  HT T   +T++      +L+ +  L DCRLY H
Sbjct: 405 HVLTCHTSTARRITNHKTKHQFYLQLRKDLLDCRLYCH 442


>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +3

Query: 582 ESTIRQKLLPFQEDGVR---FGIARHGRCMIADDMGLGKTYQALA 707
           E+T+R+    +Q +GV    F        ++AD+MGLGKT Q++A
Sbjct: 575 ENTLRE----YQLEGVNWLMFCWCNRQNSILADEMGLGKTIQSIA 615


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,967,095
Number of Sequences: 59808
Number of extensions: 441888
Number of successful extensions: 1007
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)