Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021703
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   1.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.1  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    22   6.8  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    22   6.8  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    22   6.8  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   6.8  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 512 SSICFKDIERANSGSKEHRFNANR 583
           SS C KD + A SGS+   + AN+
Sbjct: 577 SSTCKKDKKNAGSGSRFTIYKANK 600


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/20 (40%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = -2

Query: 364 ILMDSLRICL--LILNIHFR 311
           +++D+  IC+  ++LN+HFR
Sbjct: 311 MILDTFSICVTVVVLNVHFR 330


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
 Frame = +2

Query: 152 HKRQNKISNTSTSPLNKLNRKTCPLRDNLQK-NLPF*HQ 265
           H  Q +  N S +P NK   K C     L K N  F +Q
Sbjct: 432 HHFQCRYPNASVTPYNKNYTKFCSTEKRLTKQNTAFENQ 470


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/23 (34%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = -2

Query: 373 VHKILMDSLRICL--LILNIHFR 311
           +  +++ S+ IC+  ++LN+HFR
Sbjct: 312 IFAMILVSISICVTVVVLNVHFR 334


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/23 (34%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = -2

Query: 373 VHKILMDSLRICL--LILNIHFR 311
           +  +++ S+ IC+  ++LN+HFR
Sbjct: 312 IFAMILVSISICVTVVVLNVHFR 334


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 141 CLHYTRDKIK 170
           CLHYT DK K
Sbjct: 141 CLHYTVDKSK 150


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 141 CLHYTRDKIK 170
           CLHYT DK K
Sbjct: 146 CLHYTVDKSK 155


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 141 CLHYTRDKIK 170
           CLHYT DK K
Sbjct: 146 CLHYTVDKSK 155


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 174 VTRPLVHSIN*IEKLVL 224
           V R LVH++N IEK +L
Sbjct: 241 VYRRLVHAVNEIEKRLL 257


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,067
Number of Sequences: 438
Number of extensions: 4321
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)