Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021703
(725 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g07810.1 68418.m00895 SNF2 domain-containing protein / helica... 63 2e-10
At1g48310.1 68414.m05396 SNF2 domain-containing protein / helica... 55 6e-08
At3g19210.1 68416.m02438 DNA repair protein RAD54, putative simi... 39 0.004
At3g54280.1 68416.m05999 SNF2 domain-containing protein / helica... 38 0.007
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ... 36 0.027
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ... 36 0.027
At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468... 36 0.036
At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL... 34 0.11
At3g57300.1 68416.m06378 transcriptional activator, putative sim... 31 0.78
At5g19310.1 68418.m02301 homeotic gene regulator, putative simil... 31 1.0
At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar ... 31 1.0
At4g31900.1 68417.m04533 chromatin remodeling factor, putative s... 30 1.4
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 30 1.4
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 30 1.4
At2g02090.1 68415.m00145 SNF2 domain-containing protein / helica... 30 1.4
At2g44980.2 68415.m05601 transcription regulatory protein SNF2, ... 29 2.4
At2g44980.1 68415.m05600 transcription regulatory protein SNF2, ... 29 2.4
At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar ... 29 3.1
At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar ... 29 3.1
At3g06010.1 68416.m00686 homeotic gene regulator, putative simil... 29 3.1
At5g66750.1 68418.m08414 SNF2 domain-containing protein / helica... 29 4.1
At3g54870.1 68416.m06079 armadillo/beta-catenin repeat family pr... 29 4.1
At2g18760.1 68415.m02184 SNF2 domain-containing protein / helica... 28 5.5
At1g11690.1 68414.m01342 hypothetical protein 28 5.5
At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding famil... 28 7.2
At1g80650.1 68414.m09464 double-stranded RNA-binding domain (DsR... 28 7.2
At1g08600.1 68414.m00953 SNF2 domain-containing protein / helica... 28 7.2
At5g43310.1 68418.m05293 COP1-interacting protein-related contai... 27 9.6
>At5g07810.1 68418.m00895 SNF2 domain-containing protein / helicase
domain-containing protein / HNH endonuclease
domain-containing protein similar to HepA-related
protein HARP [Homo sapiens] GI:6693791; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain, PF01844: HNH
endonuclease
Length = 1190
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/40 (70%), Positives = 33/40 (82%)
Frame = +3
Query: 603 LLPFQEDGVRFGIARHGRCMIADDMGLGKTYQALAIASYY 722
LLPFQ DG+RFG+ R GRC IAD+MGLGKT QA+AIA +
Sbjct: 204 LLPFQLDGLRFGLRRGGRCFIADEMGLGKTLQAIAIAGCF 243
>At1g48310.1 68414.m05396 SNF2 domain-containing protein / helicase
domain-containing protein contains similarity to
DNA-dependent ATPase A GI:6651385 from [Bos taurus]};
contains PFam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2
Length = 673
Score = 54.8 bits (126), Expect = 6e-08
Identities = 24/46 (52%), Positives = 33/46 (71%)
Frame = +3
Query: 579 IESTIRQKLLPFQEDGVRFGIARHGRCMIADDMGLGKTYQALAIAS 716
I S I KLLPFQ +G+ F + GR ++AD+MGLGKT QA+A+ +
Sbjct: 164 IPSHIEPKLLPFQREGIEFILQHGGRVLLADEMGLGKTLQAIAVTT 209
>At3g19210.1 68416.m02438 DNA repair protein RAD54, putative similar
to RAD54 GB:CAA71278 from [Drosophila melanogaster]
(Mol. Cell. Biol.(1997) 17 (10), 6097-6104)
Length = 852
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Frame = +3
Query: 561 NIDLMPIESTIRQKLLPFQEDGVRF---------GIARHGRCMIADDMGLGKTYQALAI 710
N+ + + S + + L P Q +GV+F G A C++ADDMGLGKT Q++ +
Sbjct: 62 NVTTIMVHSVLVKFLRPHQREGVQFMFDCVSGLHGSANINGCILADDMGLGKTLQSITL 120
>At3g54280.1 68416.m05999 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|O14981
TBP-associated factor 172 (TAF-172) (TAF(II)170) {Homo
sapiens}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 2049
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Frame = +3
Query: 540 EQTVDPKNIDLMPIESTIRQKLLPFQEDGVRF-GIARHGRC--MIADDMGLGKTYQALAI 710
EQ +D +ID + + ++ +L +Q++G+ + G + + ++ DDMGLGKT QA AI
Sbjct: 1423 EQLLDNSHIDDYKLCTELKVQLRRYQQEGINWLGFLKRFKLHGILCDDMGLGKTLQASAI 1482
Query: 711 AS 716
+
Sbjct: 1483 VA 1484
>At2g28290.2 68415.m03434 chromatin remodeling protein, putative
(SYD) similar to transcriptional activator HBRM [Homo
sapiens] GI:414117; contains Pfam profiles PF00271:
Helicase conserved C-terminal domain, PF00176: SNF2
family N-terminal domain; identical to cDNA putative
chromatin remodeling protein SYD (SPLAYED) GI:13603720
Length = 3529
Score = 35.9 bits (79), Expect = 0.027
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Frame = +3
Query: 558 KNIDLMPIESTIRQKLLPFQEDGVRFGIA---RHGRCMIADDMGLGKTYQALAIASY 719
+NI+ P S + KL +Q +G+R+ ++ H ++AD+MGLGKT Q +++ Y
Sbjct: 740 ENINEQP-SSLVGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICY 795
>At2g28290.1 68415.m03433 chromatin remodeling protein, putative
(SYD) similar to transcriptional activator HBRM [Homo
sapiens] GI:414117; contains Pfam profiles PF00271:
Helicase conserved C-terminal domain, PF00176: SNF2
family N-terminal domain; identical to cDNA putative
chromatin remodeling protein SYD (SPLAYED) GI:13603720
Length = 3574
Score = 35.9 bits (79), Expect = 0.027
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Frame = +3
Query: 558 KNIDLMPIESTIRQKLLPFQEDGVRFGIA---RHGRCMIADDMGLGKTYQALAIASY 719
+NI+ P S + KL +Q +G+R+ ++ H ++AD+MGLGKT Q +++ Y
Sbjct: 740 ENINEQP-SSLVGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICY 795
>At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468
Excision repair protein ERCC-6 (Cockayne syndrome
protein CSB) {Homo sapiens}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF02810: SEC-C motif
Length = 862
Score = 35.5 bits (78), Expect = 0.036
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Frame = +3
Query: 564 IDLMPIESTIRQKLLPFQEDGVRFGIA----RHGRCMIADDMGLGKTYQALA-IASYY 722
I ++ + ++I +LL Q +GV+F HG ++ DDMGLGKT Q +A +A+ Y
Sbjct: 126 IPIIHVPASINCRLLEHQREGVKFMYNLYKNNHGG-ILGDDMGLGKTIQTIAFLAAVY 182
>At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE)
identical to chromatin remodeling factor CHD3
[Arabidopsis thaliana] GI:6478518
Length = 1384
Score = 33.9 bits (74), Expect = 0.11
Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Frame = +3
Query: 603 LLPFQEDGV---RFGIARHGRCMIADDMGLGKTYQALAI 710
L P+Q +G+ RF ++ ++AD+MGLGKT Q++A+
Sbjct: 273 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAL 311
>At3g57300.1 68416.m06378 transcriptional activator, putative
similar to transcriptional activator SRCAP [Homo
sapiens] GI:5106572; contains Pfam profiles PF00271:
Helicase conserved C-terminal domain, PF00176: SNF2
family N-terminal domain
Length = 1507
Score = 31.1 bits (67), Expect = 0.78
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 9/74 (12%)
Frame = +3
Query: 525 LKILKEQTVDPKNIDLMPIESTIRQK------LLPFQEDGVRFGIARHGRCM---IADDM 677
+ + +D N MP+ ST++ L +Q G+++ + + + + +AD+M
Sbjct: 554 ISVSGSSNIDLHNPSTMPVTSTVQTPELFKGTLKEYQMKGLQWLVNCYEQGLNGILADEM 613
Query: 678 GLGKTYQALAIASY 719
GLGKT QA+A ++
Sbjct: 614 GLGKTIQAMAFLAH 627
>At5g19310.1 68418.m02301 homeotic gene regulator, putative similar
to SP|P25439 Homeotic gene regulator (Brahma protein)
{Drosophila melanogaster}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1064
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/43 (32%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = +3
Query: 600 KLLPFQEDGVRFGIARHGRC---MIADDMGLGKTYQALAIASY 719
+L +Q +G+++ ++ + ++AD+MGLGKT Q +A+ +Y
Sbjct: 385 ELRSYQLEGLQWMVSLYNNDYNGILADEMGLGKTIQTIALIAY 427
>At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1055
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Frame = +3
Query: 561 NIDLMPIESTIRQKLLPFQEDGVRFGIARHGRCM---IADDMGLGKTYQALAIASY 719
N L+ S I+ K+ +Q G+ + I + + +AD+MGLGKT Q +++ +Y
Sbjct: 175 NTRLLTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAY 230
>At4g31900.1 68417.m04533 chromatin remodeling factor, putative
strong similarity to chromatin remodeling factor CHD3
(PICKLE) [Arabidopsis thaliana] GI:6478518; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain
Length = 1202
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Frame = +3
Query: 558 KNIDLMPIESTIRQKLLPFQEDGV---RFGIARHGRCMIADDMGLGKTYQALA-IASYY 722
K DL P + L +Q +G+ R+ ++ ++AD+MGLGKT Q++A +AS +
Sbjct: 212 KQFDLTP--EFLTGTLHTYQLEGLNFLRYSWSKKTNVILADEMGLGKTIQSIAFLASLF 268
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +3
Query: 660 MIADDMGLGKTYQALAIASY 719
++AD+MGLGKT Q +A+ +Y
Sbjct: 1003 ILADEMGLGKTVQVMALIAY 1022
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +3
Query: 660 MIADDMGLGKTYQALAIASY 719
++AD+MGLGKT Q +A+ +Y
Sbjct: 1003 ILADEMGLGKTVQVMALIAY 1022
>At2g02090.1 68415.m00145 SNF2 domain-containing protein / helicase
domain-containing protein similar to transcriptional
activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 763
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Frame = +3
Query: 582 ESTIRQKLLPFQEDGVRFGIARHGR----CMIADDMGLGKTYQAL 704
+S + L P+Q GV F + + + ++AD+MGLGKT QA+
Sbjct: 206 DSDFQPILKPYQLVGVNFLLLLYKKGIEGAILADEMGLGKTIQAI 250
>At2g44980.2 68415.m05601 transcription regulatory protein SNF2,
putative similar to SNF2P [Oryza sativa (japonica
cultivar-group)] GI:23193483; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain; CG donor site annotated
in one isoform based on protein alignments.
Length = 870
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = +3
Query: 582 ESTIRQKLLPFQEDGVRFGIARH----GRCMIADDMGLGKTYQALAIASYYR 725
E + L P Q +GV + I ++ + D MGLGKT QA++ SY +
Sbjct: 44 EFGVTATLKPHQVEGVSWLIQKYLLGVNVVLELDQMGLGKTLQAISFLSYLK 95
>At2g44980.1 68415.m05600 transcription regulatory protein SNF2,
putative similar to SNF2P [Oryza sativa (japonica
cultivar-group)] GI:23193483; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain; CG donor site annotated
in one isoform based on protein alignments.
Length = 851
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = +3
Query: 582 ESTIRQKLLPFQEDGVRFGIARH----GRCMIADDMGLGKTYQALAIASYYR 725
E + L P Q +GV + I ++ + D MGLGKT QA++ SY +
Sbjct: 44 EFGVTATLKPHQVEGVSWLIQKYLLGVNVVLELDQMGLGKTLQAISFLSYLK 95
>At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1072
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = +3
Query: 660 MIADDMGLGKTYQALAIASY 719
++AD+MGLGKT Q +++ +Y
Sbjct: 216 ILADEMGLGKTLQTISLLAY 235
>At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1069
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = +3
Query: 660 MIADDMGLGKTYQALAIASY 719
++AD+MGLGKT Q +++ +Y
Sbjct: 216 ILADEMGLGKTLQTISLLAY 235
>At3g06010.1 68416.m00686 homeotic gene regulator, putative similar
to SP|P25439 Homeotic gene regulator (Brahma protein)
{Drosophila melanogaster}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1132
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = +3
Query: 660 MIADDMGLGKTYQALAIASY 719
++AD+MGLGKT Q +++ +Y
Sbjct: 455 ILADEMGLGKTIQTISLIAY 474
>At5g66750.1 68418.m08414 SNF2 domain-containing protein / helicase
domain-containing protein similar to
proliferation-associated SNF2-like protein [Homo
sapiens] GI:8980660; contains Pfam profiles PF00271:
Helicase conserved C-terminal domain, PF00176: SNF2
family N-terminal domain
Length = 764
Score = 28.7 bits (61), Expect = 4.1
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Frame = +3
Query: 531 ILKEQTVDPKNIDLMPIESTIRQKLLPFQEDGVRFGIA--RHG-RCMIADDMGLGKTYQA 701
+ +E+TV +L P+ + +L +Q GV++ I+ ++G ++AD MGLGKT Q
Sbjct: 180 LTEEETVIKLQNELCPLLTG--GQLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQT 237
Query: 702 LAIASYYR 725
+ S+ +
Sbjct: 238 IGFLSHLK 245
>At3g54870.1 68416.m06079 armadillo/beta-catenin repeat family
protein / kinesin motor family protein kinesin,
Syncephalastrum racemosum, AJ225894
Length = 941
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 89 FDTFKMLCSKEEIEKKRLSALHKRQNKISNTSTSPLNKLNRK 214
FD ++ LC K E + L+A +RQNK+ N+ L K R+
Sbjct: 451 FD-YESLCRKLETQVDHLTAEVERQNKLRNSEKHELEKRLRE 491
>At2g18760.1 68415.m02184 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|Q03468 Excision
repair protein ERCC-6 (Cockayne syndrome protein CSB)
{Homo sapiens}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1187
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +3
Query: 579 IESTIRQKLLPFQEDGVRFGIARHGRC---MIADDMGLGKTYQALA 707
I I +KL +Q GV++ H + +I D+MGLGKT Q L+
Sbjct: 377 IPECIFRKLFDYQRVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLS 422
>At1g11690.1 68414.m01342 hypothetical protein
Length = 247
Score = 28.3 bits (60), Expect = 5.5
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +2
Query: 92 DTFKMLCSKEEIEKKRLSALHKRQNKISNTSTSPLNKLNRKTCPLRDNLQK 244
D K SKE EKKR+ A + R K S +N+L R+ RD ++K
Sbjct: 83 DYLKEKLSKEREEKKRVKAENSRLKKKILDMESSVNRLRRE----RDTMEK 129
>At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to SP|O14647
Chromodomain-helicase-DNA-binding protein 2 (CHD-2)
{Homo sapiens}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00385: 'chromo' (CHRromatin
Organization MOdifier)
Length = 1722
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +3
Query: 558 KNIDLMPIESTIRQKLLPFQEDGVRFGI---ARHGRCMIADDMGLGKTYQALAIASY 719
+ +D P E I L +Q +G+ F + ++AD+MGLGKT Q++++ +
Sbjct: 611 RKLDEQP-EWLIGGTLRDYQLEGLNFLVNSWLNDTNVILADEMGLGKTVQSVSMLGF 666
>At1g80650.1 68414.m09464 double-stranded RNA-binding domain
(DsRBD)-containing protein contains Pfam profile
PF00035: Double-stranded RNA binding motif
Length = 198
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Frame = -3
Query: 723 CSSLLWRVPGKSC---RAPCHLLSYTYR 649
C+S WR P C PCHL +TY+
Sbjct: 123 CASKRWRPPVYECCNVDGPCHLRLFTYK 150
>At1g08600.1 68414.m00953 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|P46100
Transcriptional regulator ATRX {Homo sapiens}; contains
PFam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain;
non-consensus GC donor splice site at exon boundary
28614
Length = 1457
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 657 CMIADDMGLGKTYQALA 707
C++A MGLGKT+Q +A
Sbjct: 718 CILAHTMGLGKTFQVIA 734
>At5g43310.1 68418.m05293 COP1-interacting protein-related contains
similarity to COP1-Interacting Protein 7 (CIP7)
[Arabidopsis thaliana] GI:3327868
Length = 1237
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 92 DTFKMLCSKEEIEKKRLSALH-KRQNKISNTSTSPLNK 202
D KM KEE ++KR+ AL +RQ +I++ S S + +
Sbjct: 747 DLQKMKKEKEEEDRKRIEALKIERQKRIASKSNSAVGQ 784
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,497,695
Number of Sequences: 28952
Number of extensions: 321392
Number of successful extensions: 854
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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