Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021702
         (764 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   1.5  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   2.0  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   2.0  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   2.0  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    23   2.0  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    22   4.7  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +3

Query: 195 FRQRFPSYPCHNRLQSWLSLEPQAELGLSHVLRSAAGLTTKNISSFL 335
           +R+RF     +  L  W  ++ QAE  LS  +   A L T+N SS L
Sbjct: 239 YRKRFRMEKIYVALV-W-GVKDQAEFTLSGQVMKYAALATENFSSLL 283


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 459 SYSGSPVHHSICPVLL 412
           S+ G P+HH I P +L
Sbjct: 91  SHHGPPIHHQIRPPIL 106


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 459 SYSGSPVHHSICPVLL 412
           S+ G P+HH I P +L
Sbjct: 91  SHHGPPIHHQIRPPIL 106


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 459 SYSGSPVHHSICPVLL 412
           S+ G P+HH I P +L
Sbjct: 91  SHHGPPIHHQIRPPIL 106


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 459 SYSGSPVHHSICPVLL 412
           S+ G P+HH I P +L
Sbjct: 91  SHHGPPIHHQIRPPIL 106


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 332 PYSTQTLSDWSIC*CFWRQRINLLYFGSNTG 424
           P     LS+++ C C W Q + LL  G+  G
Sbjct: 565 PTGGDALSEFNFCGCGWPQHM-LLPKGTEAG 594


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,084
Number of Sequences: 336
Number of extensions: 3655
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)