Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021702
(764 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp... 34 0.026
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ... 29 0.55
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 29 0.73
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 28 1.3
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 27 2.9
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 27 3.9
SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy... 26 5.1
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 26 5.1
SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual 26 6.8
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces... 26 6.8
>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
beta subunit Qcr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 457
Score = 33.9 bits (74), Expect = 0.026
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = +3
Query: 273 GLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLNDALEIL 452
G +H L A TKN S ++ + GA+++A RE Y A ++ + +A+ +L
Sbjct: 63 GAAHFLEHLAFKGTKNRSQKALELEFENTGAHLNAYTSREQTVYYAHAFKNAVPNAVAVL 122
Query: 453 NNLVSN 470
++++N
Sbjct: 123 ADILTN 128
>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 426
Score = 29.5 bits (63), Expect = 0.55
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +2
Query: 551 AVDLLHKAAYRRGLGNSLFISPKRINDISSESLQLFASQNITPSRCAVTVIGDSQERAA 727
A+ LH+ A+ RG+GN +++ IS ++ FAS+ S +V G ++A+
Sbjct: 156 AMAKLHEKAFHRGIGNEVYLPASASPSIS--EIKDFASKAYVKSNFSVISSGPDVQKAS 212
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 29.1 bits (62), Expect = 0.73
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 384 DRELIYYTLEATQDKLNDALEILNNLVSNQEFRP 485
+REL YY L+ +KL++ + LN + ++ P
Sbjct: 429 ERELKYYELKRKDEKLDEGIRALNQALHHESIMP 462
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +3
Query: 228 NRLQSWLSLEPQAELGLSHVLRSAAG-LTTKNISSFLIQRKLSQIGAYVSASGDRELIYY 404
N + +SL L S L S +G T+ N+S+ QR ++ + S + D +YY
Sbjct: 65 NSYSNGVSLSNGTLLSTSSPLISTSGQFTSNNVSTTSSQRHNTKTITFFSGTSDYTSVYY 124
Query: 405 TLEATQD 425
T D
Sbjct: 125 DTTGTDD 131
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 27.1 bits (57), Expect = 2.9
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +3
Query: 249 SLEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDR-ELIYYTL-EATQ 422
+L P+AEL H+L G + ++S+F I +++ S R E ++ EA+
Sbjct: 16 NLAPRAELWQRHLLEKKEGDQSISVSAFNISSMHNELSGLSEKSRQRVEAVWAAFSEASC 75
Query: 423 DKLNDALE-ILNNLVSN 470
+ AL+ ILNN S+
Sbjct: 76 SERKLALQGILNNCSSS 92
>SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1163
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 569 KAAYRRGLGNSLFISPKRINDISSESLQ 652
K ++RRGL N + S KR+ D E ++
Sbjct: 1110 KESFRRGLNNRVKFSNKRVRDDYDEEME 1137
>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 20 FVAILPKVSKNLRKWHPKLSSPPLFVMLRSGATPKL 127
FVA L V + L +WH KL F ++ PK+
Sbjct: 70 FVADLNGVYRQLLRWHAKLPRVQPFYAVKCNPDPKV 105
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 26.2 bits (55), Expect = 5.1
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Frame = +3
Query: 63 GIQNSRRPLYSSCYDQGLRPSCAGSKERC*DP-IKCFT-----*QDVR-SCFRQRFPSYP 221
G ++ L + CY G P C G+ C + I FT D+R C Q YP
Sbjct: 794 GAYDTCAKLITGCYQTGFTPVCIGASLYCNNAMIGPFTKTGLNIYDIREECRDQEHLCYP 853
Query: 222 CHNRLQSWLSLE-PQAELGLSH 284
++S+L+ E Q LG+ +
Sbjct: 854 ETGAIESYLNQEFVQEALGVEY 875
>SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 323
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 336 IQRKLSQIGAYVSASGDRELIYYTLEATQDKLNDA 440
+QR+L Q V+ GD L T+E Q +DA
Sbjct: 102 VQRELEQQRVVVNIGGDHSLAIGTVEGVQAVYDDA 136
>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 316
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = -2
Query: 565 EQIYSTNLGW*RNNIIFQTGALSLSSHGLNSWFETKLFRISSASFNLS 422
EQ++ + W N + L +H L WF + R++ +F LS
Sbjct: 146 EQVFELKV-WSPNQFLLNFACLFSPAHALILWFYSTSLRVTLLTFLLS 192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,115,648
Number of Sequences: 5004
Number of extensions: 64338
Number of successful extensions: 170
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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