Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021702
(764 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0648 - 30844289-30844341,30844536-30844648,30845435-308454... 52 5e-07
01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489... 51 1e-06
05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948... 48 6e-06
12_02_0312 + 17395716-17398112 29 4.1
04_04_1283 - 32373774-32373821,32373834-32373958,32375717-32376227 29 4.1
04_04_1122 + 31052497-31052629,31053133-31053191,31053285-310535... 29 5.4
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161... 28 7.1
05_04_0226 + 19215091-19215172,19215281-19215394,19215508-192155... 28 7.1
09_02_0229 - 6062825-6064899,6064943-6065432,6065479-6065956,606... 28 9.4
>01_06_0648 -
30844289-30844341,30844536-30844648,30845435-30845484,
30845572-30845642,30845725-30845797,30846744-30846841,
30846936-30847002,30847150-30847230,30847312-30847479,
30847563-30847730,30847813-30848109,30848205-30848426,
30849287-30849325
Length = 499
Score = 52.0 bits (119), Expect = 5e-07
Identities = 29/82 (35%), Positives = 44/82 (53%)
Frame = +3
Query: 255 EPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLN 434
E A G SH+L A +T N S + R++ IG VSAS RE + YT +A + +
Sbjct: 104 ETPASSGASHLLERMAFKSTTNRSHLRLVREVEAIGGNVSASASREQMCYTYDAFKAYVP 163
Query: 435 DALEILNNLVSNQEFRPWELND 500
+ +E+L + V N F WE+ +
Sbjct: 164 EMVEVLIDSVRNPAFFNWEIKE 185
>01_01_0645 +
4890647-4890682,4891684-4891929,4892021-4892317,
4892407-4892574,4892674-4892841,4892924-4893004,
4893105-4893171,4893657-4893751,4894027-4894099,
4894177-4894247,4894325-4894374,4895263-4895375,
4895461-4895513
Length = 505
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/82 (30%), Positives = 44/82 (53%)
Frame = +3
Query: 255 EPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLN 434
E LG + +L+ A TT N S + R++ +G V AS +RE++ Y+ A + +
Sbjct: 111 EAPETLGATQLLKKMAYTTTTNRSHLRVVREIEAVGGNVKASANREMMSYSYAALKTYMP 170
Query: 435 DALEILNNLVSNQEFRPWELND 500
+ +E+L + V N F WE+ +
Sbjct: 171 EMVEVLIDCVRNPAFLDWEVKE 192
>05_06_0132 +
25893241-25893435,25894266-25894487,25894567-25894863,
25894944-25895111,25895201-25895368,25895456-25895536,
25895704-25895770,25895874-25895971,25896587-25896659,
25896753-25896823,25896919-25896968,25897698-25897810,
25898182-25898300,25898629-25898721,25899025-25899051,
25899422-25899823,25900467-25900513,25900612-25900651,
25900733-25900795,25900881-25901018,25901873-25902031,
25902111-25902164,25902324-25902392,25902514-25902643,
25902909-25902949,25903133-25903178,25903200-25903357,
25903560-25903605,25903702-25903853,25904022-25904243
Length = 1202
Score = 48.4 bits (110), Expect = 6e-06
Identities = 27/82 (32%), Positives = 42/82 (51%)
Frame = +3
Query: 255 EPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLN 434
E + G SH+L A +T N S + R++ IG V AS RE + YT +A +
Sbjct: 156 ETSSSSGTSHLLERMAFKSTTNRSHLRLVREVEAIGGNVFASASREQMSYTYDALKCYAP 215
Query: 435 DALEILNNLVSNQEFRPWELND 500
+ +E+L + V N F WE+ +
Sbjct: 216 EMVEVLIDSVRNPAFLEWEVKE 237
Score = 33.1 bits (72), Expect = 0.25
Identities = 17/71 (23%), Positives = 29/71 (40%)
Frame = +2
Query: 527 ISLPPQIRAVDLLHKAAYRRGLGNSLFISPKRINDISSESLQLFASQNITPSRCAVTVIG 706
+S P ++ LH A Y L L S +N + +L+ F S+N T R + G
Sbjct: 249 VSGDPHGLLMEALHSAGYSGALAKPLMASESAVNRLDVATLEEFVSENYTAPRMVLAASG 308
Query: 707 DSQERAALIVQ 739
+ + +
Sbjct: 309 IEHDELVSVAE 319
>12_02_0312 + 17395716-17398112
Length = 798
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/63 (25%), Positives = 35/63 (55%)
Frame = +3
Query: 285 VLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLNDALEILNNLV 464
+++S +G + K ++ +Q+KL ++ SGD+ + + + D +ND E++N L
Sbjct: 238 IIQSDSGESNKQLTLEALQKKLHEL------SGDKRYLLVLDDISHDNINDWEELMNLLP 291
Query: 465 SNQ 473
S +
Sbjct: 292 SGR 294
>04_04_1283 - 32373774-32373821,32373834-32373958,32375717-32376227
Length = 227
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 210 PSYPCHNRLQSWLSLEPQAELGLSHVLRSAA 302
PS PCH + S L +LGL+ L SAA
Sbjct: 65 PSEPCHGHITSLAVLRSHRKLGLATKLMSAA 95
>04_04_1122 +
31052497-31052629,31053133-31053191,31053285-31053579,
31054099-31054279,31054739-31054956,31055522-31055739,
31055842-31055958,31056106-31056128,31056223-31056438,
31056536-31056677,31056822-31057067,31057659-31057856,
31058331-31058379,31060835-31060911,31061266-31061551,
31061661-31061841,31062149-31062344,31062630-31062738,
31062861-31062961,31063155-31063267,31063347-31063442,
31063531-31063746,31063857-31063995,31064087-31064332,
31064605-31064940
Length = 1396
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 330 FLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLNDALEILNNLVSNQEFRPWELNDNA 506
F I ++Q+GA VSA R++ + +E D L + + +SN P E +NA
Sbjct: 506 FAIFNSVNQLGAKVSAVQGRDVTKHLIEIWLDLLRSMMTEVEWRISNYVPTPEEYMENA 564
>07_03_0802 -
21614891-21615195,21615637-21615823,21615939-21616154,
21616669-21616872,21617336-21617569,21617670-21617763,
21618844-21618890,21619293-21619309,21620183-21620459
Length = 526
Score = 28.3 bits (60), Expect = 7.1
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Frame = +3
Query: 201 QRFPSYPCHNRLQSWLSLEPQAELGLSHV--LRSAAGLTTKNISSFLIQRKLSQIGAYVS 374
+R P+ PC + + +L EL ++ V +R +AGL +++K + +
Sbjct: 137 RRLPNGPCRKLVTDFYALRKDVELAVARVSEVRQSAGLDQLEEEIASLEKKSADSSLWDD 196
Query: 375 ASGDRELIYYTLEATQDKLNDALEILNNL 461
S +E++ E + D +++LN+L
Sbjct: 197 PSKAQEILVALTE-----VKDRVKLLNDL 220
>05_04_0226 +
19215091-19215172,19215281-19215394,19215508-19215590,
19215682-19215820,19215862-19216191,19216414-19216693,
19216795-19216956,19217134-19217349,19217458-19217495,
19217597-19217760,19217833-19217946,19218042-19218083,
19218180-19218983
Length = 855
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 64 ASKTLVAPFIRHVTIRGYAQAAPAVKKDVRIQSSVLPNKTFVAALDN 204
A + + P IRH+ ++ +++ AV R Q S+ P+K V+ L +
Sbjct: 673 ARRVSLTPVIRHIPLQPKRRSSLAVLPTQREQLSIFPDKRSVSRLSH 719
>09_02_0229 - 6062825-6064899,6064943-6065432,6065479-6065956,
6066333-6066382,6068917-6069172,6069358-6069503
Length = 1164
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 233 PSKLALVRTTSRIGIVACTTISCWTNYQ 316
P+ L + T IGI C +++C TN++
Sbjct: 1008 PTTLQKITTIQTIGITKCDSLTCVTNFR 1035
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,823,828
Number of Sequences: 37544
Number of extensions: 401526
Number of successful extensions: 833
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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