Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021702
         (764 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

J04973-1|AAA35710.1|  453|Homo sapiens protein ( Human cytochrom...    64   5e-10
BC003136-1|AAH03136.1|  453|Homo sapiens ubiquinol-cytochrome c ...    64   5e-10
BC000484-1|AAH00484.1|  453|Homo sapiens UQCRC2 protein protein.       64   5e-10
L16842-1|AAA20046.1|  480|Homo sapiens ubiquinol-cytochrome c re...    38   0.052
D26485-1|BAA05495.1|  480|Homo sapiens core I protein protein.         38   0.052
BC009586-1|AAH09586.1|  480|Homo sapiens ubiquinol-cytochrome c ...    38   0.052
BC010398-1|AAH10398.1|  490|Homo sapiens PMPCB protein protein.        36   0.16 
BC014079-1|AAH14079.2|  480|Homo sapiens PMPCB protein protein.        33   1.1  
AB058778-1|BAB47504.1|  922|Homo sapiens KIAA1875 protein protein.     31   6.0  

>J04973-1|AAA35710.1|  453|Homo sapiens protein ( Human cytochrome
           bc-1 complex core protein II mRNA, complete cds. ).
          Length = 453

 Score = 64.1 bits (149), Expect = 5e-10
 Identities = 32/85 (37%), Positives = 49/85 (57%)
 Frame = +3

Query: 255 EPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLN 434
           E  + LG +H+LR  + LTTK  SSF I R +  +G  +S +  RE + YT+E  +  ++
Sbjct: 72  EDFSNLGTTHLLRLTSSLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVECLRGDVD 131

Query: 435 DALEILNNLVSNQEFRPWELNDNAP 509
             +E L N+ +  EFR WE+ D  P
Sbjct: 132 ILMEFLLNVTTAPEFRRWEVADLQP 156



 Score = 36.7 bits (81), Expect = 0.091
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = +1

Query: 106 IRGYAQAAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSR 252
           ++  A  A A  +   ++ + LPN   +A+L+N SPV+R+ +  KAGSR
Sbjct: 22  VKATAAPAGAPPQPQDLEFTKLPNGLVIASLENYSPVSRIGLFIKAGSR 70


>BC003136-1|AAH03136.1|  453|Homo sapiens ubiquinol-cytochrome c
           reductase core protein II protein.
          Length = 453

 Score = 64.1 bits (149), Expect = 5e-10
 Identities = 32/85 (37%), Positives = 49/85 (57%)
 Frame = +3

Query: 255 EPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLN 434
           E  + LG +H+LR  + LTTK  SSF I R +  +G  +S +  RE + YT+E  +  ++
Sbjct: 72  EDFSNLGTTHLLRLTSSLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVECLRGDVD 131

Query: 435 DALEILNNLVSNQEFRPWELNDNAP 509
             +E L N+ +  EFR WE+ D  P
Sbjct: 132 ILMEFLLNVTTAPEFRRWEVADLQP 156



 Score = 36.7 bits (81), Expect = 0.091
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = +1

Query: 106 IRGYAQAAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSR 252
           ++  A  A A  +   ++ + LPN   +A+L+N SPV+R+ +  KAGSR
Sbjct: 22  VKATAAPAGAPPQPQDLEFTKLPNGLVIASLENYSPVSRIGLFIKAGSR 70


>BC000484-1|AAH00484.1|  453|Homo sapiens UQCRC2 protein protein.
          Length = 453

 Score = 64.1 bits (149), Expect = 5e-10
 Identities = 32/85 (37%), Positives = 49/85 (57%)
 Frame = +3

Query: 255 EPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLN 434
           E  + LG +H+LR  + LTTK  SSF I R +  +G  +S +  RE + YT+E  +  ++
Sbjct: 72  EDFSNLGTTHLLRLTSSLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVECLRGDVD 131

Query: 435 DALEILNNLVSNQEFRPWELNDNAP 509
             +E L N+ +  EFR WE+ D  P
Sbjct: 132 ILMEFLLNVTTAPEFRRWEVADLQP 156



 Score = 36.7 bits (81), Expect = 0.091
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = +1

Query: 106 IRGYAQAAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSR 252
           ++  A  A A  +   ++ + LPN   +A+L+N SPV+R+ +  KAGSR
Sbjct: 22  VKATAAPAGAPPQPQDLEFTKLPNGLVIASLENYSPVSRIGLFIKAGSR 70


>L16842-1|AAA20046.1|  480|Homo sapiens ubiquinol-cytochrome c
           reductase core I protein protein.
          Length = 480

 Score = 37.5 bits (83), Expect = 0.052
 Identities = 20/72 (27%), Positives = 37/72 (51%)
 Frame = +3

Query: 255 EPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLN 434
           E +   G  + L   A   TKN     +++++  +GA+++A   RE   Y ++A    L 
Sbjct: 82  ETEKNNGAGYFLEHLAFKGTKNRPGSALEKEVESMGAHLNAYSTREHTAYYIKALSKDLP 141

Query: 435 DALEILNNLVSN 470
            A+E+L ++V N
Sbjct: 142 KAVELLGDIVQN 153


>D26485-1|BAA05495.1|  480|Homo sapiens core I protein protein.
          Length = 480

 Score = 37.5 bits (83), Expect = 0.052
 Identities = 20/72 (27%), Positives = 37/72 (51%)
 Frame = +3

Query: 255 EPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLN 434
           E +   G  + L   A   TKN     +++++  +GA+++A   RE   Y ++A    L 
Sbjct: 82  ETEKNNGAGYFLEHLAFKGTKNRPGSALEKEVESMGAHLNAYSTREHTAYYIKALSKDLP 141

Query: 435 DALEILNNLVSN 470
            A+E+L ++V N
Sbjct: 142 KAVELLGDIVQN 153


>BC009586-1|AAH09586.1|  480|Homo sapiens ubiquinol-cytochrome c
           reductase core protein I protein.
          Length = 480

 Score = 37.5 bits (83), Expect = 0.052
 Identities = 20/72 (27%), Positives = 37/72 (51%)
 Frame = +3

Query: 255 EPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLN 434
           E +   G  + L   A   TKN     +++++  +GA+++A   RE   Y ++A    L 
Sbjct: 82  ETEKNNGAGYFLEHLAFKGTKNRPGSALEKEVESMGAHLNAYSTREHTAYYIKALSKDLP 141

Query: 435 DALEILNNLVSN 470
            A+E+L ++V N
Sbjct: 142 KAVELLGDIVQN 153


>BC010398-1|AAH10398.1|  490|Homo sapiens PMPCB protein protein.
          Length = 490

 Score = 35.9 bits (79), Expect = 0.16
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = +3

Query: 255 EPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLN 434
           E +   G +H L   A   TK  S   ++ ++  +GA+++A   RE   Y  +A    L 
Sbjct: 92  ENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLP 151

Query: 435 DALEILNNLVSN 470
            A+EIL +++ N
Sbjct: 152 RAVEILADIIQN 163


>BC014079-1|AAH14079.2|  480|Homo sapiens PMPCB protein protein.
          Length = 480

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 20/72 (27%), Positives = 35/72 (48%)
 Frame = +3

Query: 255 EPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLN 434
           E +   G +H     A   TK  S   ++ ++  +GA+++A   RE   Y  +A    L 
Sbjct: 83  ENEKNNGTAHFPEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLP 142

Query: 435 DALEILNNLVSN 470
            A+EIL +++ N
Sbjct: 143 RAVEILADIIQN 154


>AB058778-1|BAB47504.1|  922|Homo sapiens KIAA1875 protein protein.
          Length = 922

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 36/118 (30%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
 Frame = +3

Query: 171 T*QDVRSCFRQR-FPSYPCHNRL--QSWLSLEPQAELGLSHVLRSAAGLTTKNISSFLIQ 341
           T Q  + C R   FP Y  ++ +  Q WL+ EP A        + A  L     S    Q
Sbjct: 330 TVQPHKHCLRPICFPGYVPNSAVLQQMWLNAEPGAS-------QDALWLWRPRPSQAQWQ 382

Query: 342 RKLSQ-IGAYVSASGDRELIYYTLEATQDKLNDALEILNNLVSNQEFRPWELNDNAPV 512
           RKL Q +G      G+ +      E   ++L+ AL  L+   SNQ+   WEL D + V
Sbjct: 383 RKLLQWMGEKPGEEGEEDKKEEEEEKEDEELDWALASLSPH-SNQQLDSWELEDQSAV 439


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,144,380
Number of Sequences: 237096
Number of extensions: 2140484
Number of successful extensions: 3995
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3995
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9199990470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)