Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021702
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72514-2|CAA96675.2|  422|Caenorhabditis elegans Hypothetical pr...    48   7e-06
Z67734-5|CAD56227.1|  424|Caenorhabditis elegans Hypothetical pr...    44   1e-04
Z67734-4|CAB54182.1|  410|Caenorhabditis elegans Hypothetical pr...    44   1e-04
AL032678-2|CAC35829.2|  424|Caenorhabditis elegans Hypothetical ...    44   1e-04
AL032678-1|CAB54320.1|  410|Caenorhabditis elegans Hypothetical ...    44   1e-04
AF100306-6|AAC68920.1|  427|Caenorhabditis elegans Hypothetical ...    41   0.001
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    31   0.90 
Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu...    29   4.8  
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.      29   4.8  

>Z72514-2|CAA96675.2|  422|Caenorhabditis elegans Hypothetical
           protein T10B10.2 protein.
          Length = 422

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 24/85 (28%), Positives = 40/85 (47%)
 Frame = +3

Query: 255 EPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLN 434
           E   + GLSH +R+  G  T+      +   LSQ G  + +   R+L   +L   ++  +
Sbjct: 56  EKANQAGLSHTIRNFVGRDTQEYFGNTVVWTLSQTGGVLKSFTSRDLFGVSLTIPRESTS 115

Query: 435 DALEILNNLVSNQEFRPWELNDNAP 509
             L +L  +  N  F+PWE+ D  P
Sbjct: 116 VGLSVLGQVAGNPGFKPWEVEDVLP 140



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +2

Query: 554 VDLLHKAAYRRG-LGNSLFISPKRINDISSESLQLFASQN 670
           VD +HKAAYR G LGNS++    +I  I + +L  FA Q+
Sbjct: 156 VDQIHKAAYRNGGLGNSIYAPCSKIGSICTSTLSSFAEQH 195


>Z67734-5|CAD56227.1|  424|Caenorhabditis elegans Hypothetical
           protein VW06B3R.1b protein.
          Length = 424

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 20/82 (24%), Positives = 42/82 (51%)
 Frame = +3

Query: 255 EPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLN 434
           +P  + GL+H++R++ G    N     +    +Q G  ++A  +R+++   +   +D+  
Sbjct: 73  QPANKQGLTHLIRNSVGRDAPNFPGLALVWNTAQNGGNLTAVSNRDVLAIEVNVVRDQSA 132

Query: 435 DALEILNNLVSNQEFRPWELND 500
             L +L  L  N  F+PW++ D
Sbjct: 133 VVLSLLGQL-GNNAFKPWDVED 153


>Z67734-4|CAB54182.1|  410|Caenorhabditis elegans Hypothetical
           protein VW06B3R.1a protein.
          Length = 410

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 20/82 (24%), Positives = 42/82 (51%)
 Frame = +3

Query: 255 EPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLN 434
           +P  + GL+H++R++ G    N     +    +Q G  ++A  +R+++   +   +D+  
Sbjct: 59  QPANKQGLTHLIRNSVGRDAPNFPGLALVWNTAQNGGNLTAVSNRDVLAIEVNVVRDQSA 118

Query: 435 DALEILNNLVSNQEFRPWELND 500
             L +L  L  N  F+PW++ D
Sbjct: 119 VVLSLLGQL-GNNAFKPWDVED 139


>AL032678-2|CAC35829.2|  424|Caenorhabditis elegans Hypothetical
           protein VW06B3R.1b protein.
          Length = 424

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 20/82 (24%), Positives = 42/82 (51%)
 Frame = +3

Query: 255 EPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLN 434
           +P  + GL+H++R++ G    N     +    +Q G  ++A  +R+++   +   +D+  
Sbjct: 73  QPANKQGLTHLIRNSVGRDAPNFPGLALVWNTAQNGGNLTAVSNRDVLAIEVNVVRDQSA 132

Query: 435 DALEILNNLVSNQEFRPWELND 500
             L +L  L  N  F+PW++ D
Sbjct: 133 VVLSLLGQL-GNNAFKPWDVED 153


>AL032678-1|CAB54320.1|  410|Caenorhabditis elegans Hypothetical
           protein VW06B3R.1a protein.
          Length = 410

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 20/82 (24%), Positives = 42/82 (51%)
 Frame = +3

Query: 255 EPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLN 434
           +P  + GL+H++R++ G    N     +    +Q G  ++A  +R+++   +   +D+  
Sbjct: 59  QPANKQGLTHLIRNSVGRDAPNFPGLALVWNTAQNGGNLTAVSNRDVLAIEVNVVRDQSA 118

Query: 435 DALEILNNLVSNQEFRPWELND 500
             L +L  L  N  F+PW++ D
Sbjct: 119 VVLSLLGQL-GNNAFKPWDVED 139


>AF100306-6|AAC68920.1|  427|Caenorhabditis elegans Hypothetical
           protein T24C4.1 protein.
          Length = 427

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 21/85 (24%), Positives = 40/85 (47%)
 Frame = +3

Query: 255 EPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLN 434
           E   + GL H +R+  G   ++     +    +  GA +++   R++    +   +D+  
Sbjct: 55  EKVTQPGLVHHVRNFVGRDAQSYPGLQLVWSSAASGANLNSFATRDIFGVQISVARDQAA 114

Query: 435 DALEILNNLVSNQEFRPWELNDNAP 509
            AL IL ++ +   F+PWEL D  P
Sbjct: 115 YALSILGHVAAKPAFKPWELEDVTP 139


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
            protein F48E3.8a protein.
          Length = 2427

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
 Frame = +1

Query: 49   KLTKMASKTLVAPFIRHVTIRGYAQAAP-AVKKDVRIQ---SSVLPNKTFVAALDNGSPV 216
            KLT + SK L+ P   H T    +   P  VK    +Q   ++ LP + +V++  N  P+
Sbjct: 1030 KLTVLESKKLIKPIKAHTTPTAASNTTPIPVKTTTTLQTTTATTLP-ENYVSSSTN-RPL 1087

Query: 217  TRVTIAFKAGSR*NHKP 267
            T + I+ K GS  +  P
Sbjct: 1088 TPIIISMKLGSTSSPSP 1104


>Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical protein
            R09E10.7 protein.
          Length = 1717

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 9    NHKPLLRYYLKFLKTYENGIQNSRRPLYSSCYDQGLRPSCAGSKERC 149
            NH     Y+L+   TY+   Q  +RP++    DQ   P    +  RC
Sbjct: 1006 NHLSNAAYFLERCPTYQRRFQPGQRPVFPYRDDQAQEPVPESAPNRC 1052


>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
           guidance protein 2,isoform a protein.
          Length = 2886

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 32  LPKVSKNLRKWHPKLSSPPLFVMLRSGATPKLR-RQ*RKMLGSNQVF 169
           LP + K L +W+ K        ML   ATP+LR +  +K+L  N +F
Sbjct: 113 LPPILKVLVEWYEKYDESLCLSMLSPIATPELRLKLHKKLLAVNYLF 159


>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
          Length = 2914

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 32  LPKVSKNLRKWHPKLSSPPLFVMLRSGATPKLR-RQ*RKMLGSNQVF 169
           LP + K L +W+ K        ML   ATP+LR +  +K+L  N +F
Sbjct: 113 LPPILKVLVEWYEKYDESLCLSMLSPIATPELRLKLHKKLLAVNYLF 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,034,404
Number of Sequences: 27780
Number of extensions: 352017
Number of successful extensions: 810
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)