Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021702
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16480.1 68416.m02103 mitochondrial processing peptidase alph...    54   1e-07
At1g51980.1 68414.m05863 mitochondrial processing peptidase alph...    53   2e-07
At5g49580.1 68418.m06136 DNAJ heat shock N-terminal domain-conta...    28   5.9  

>At3g16480.1 68416.m02103 mitochondrial processing peptidase alpha
           subunit, putative similar to mitochondrial processing
           peptidase alpha subunit, mitochondrial precursor,
           Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
           [Potato] SWISS-PROT:P29677
          Length = 499

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 27/76 (35%), Positives = 44/76 (57%)
 Frame = +3

Query: 273 GLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLNDALEIL 452
           G +H+L   A  +T N S F + R++  IG   SAS  RE + YT++A +  + + +E+L
Sbjct: 114 GATHLLERMAFKSTLNRSHFRLVREIEAIGGNTSASASREQMGYTIDALKTYVPEMVEVL 173

Query: 453 NNLVSNQEFRPWELND 500
            + V N  F  WE+N+
Sbjct: 174 IDSVRNPAFLDWEVNE 189


>At1g51980.1 68414.m05863 mitochondrial processing peptidase alpha
           subunit, putative similar to mitochondrial processing
           peptidase alpha subunit, mitochondrial precursor,
           Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
           [Potato] SWISS-PROT:P29677
          Length = 503

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 26/76 (34%), Positives = 44/76 (57%)
 Frame = +3

Query: 273 GLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDRELIYYTLEATQDKLNDALEIL 452
           G +H+L   A  +T N + F + R++  IG   SAS  RE + YT++A +  + + +E+L
Sbjct: 118 GATHLLERMAFKSTLNRTHFRLVREIEAIGGNTSASASREQMSYTIDALKTYVPEMVEVL 177

Query: 453 NNLVSNQEFRPWELND 500
            + V N  F  WE+N+
Sbjct: 178 IDSVRNPAFLDWEVNE 193


>At5g49580.1 68418.m06136 DNAJ heat shock N-terminal
           domain-containing protein contains similarity to S-locus
           protein 5 GI:6069485 from [Brassica rapa]; contains Pfam
           profile PF00226 DnaJ domain
          Length = 695

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 138 YCRRSLGVAPDRNMTNKGGDESFGCHFRKFLETLGSIATKAYD 10
           Y ++++ V PD+NM N+   E+F      +   L S+  K+YD
Sbjct: 430 YRKKAMLVHPDKNMGNERAAEAFKKLQNAYEVLLDSVKQKSYD 472


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,247,634
Number of Sequences: 28952
Number of extensions: 334544
Number of successful extensions: 802
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)