Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021701
         (746 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    24   1.5  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   4.5  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    22   6.0  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -3

Query: 738 PAKDQSRGPVSAHPMHEVPRIWTWSKILHRECGQMQSLWRTASAREMR 595
           P K ++  P   HP  E+P      KI +    Q+++L++     E+R
Sbjct: 370 PTKTRTNLPTHRHPQDEIPYC---GKIFNLTTRQVRTLYKLPPNYEIR 414


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/31 (22%), Positives = 16/31 (51%)
 Frame = -3

Query: 636 MQSLWRTASAREMRRLHRRDRTAVLQLLTLW 544
           +  LW   + + ++RL R +    + L+ +W
Sbjct: 425 LHDLWGEFTLKALKRLERANNGVKIPLVIIW 455



 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 541 NPECEQLQHCGSVPAMKSAHFSRRCGPPQ 627
           N  CE+    G++P +  +  S  CG  Q
Sbjct: 62  NQRCERRHIKGAIPVVSLSTCSMLCGSTQ 90


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -3

Query: 657 LHRECGQMQSLWRTASAREMRRLHRRDRTAVLQLLTLW 544
           L   C +     RTA+ R ++RL +       QL  +W
Sbjct: 68  LQTNCAKCTEKQRTAAYRSIKRLKKEYPKIWEQLRAVW 105


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,369
Number of Sequences: 336
Number of extensions: 2635
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)