Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021701
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    29   0.53 
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    28   1.6  
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    27   2.8  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   3.8  
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    26   5.0  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    26   6.6  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    25   8.7  

>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = -2

Query: 715 TSLRSSNARGASHLDMVENFAPRVWT--DAVTVE-DRICARNAQTSSQGPNRSAATAHTL 545
           T+    + R AS LD+++N  P   +   + T   D + A N  + S  PN +++TA + 
Sbjct: 152 TNSAGLSLRSASALDVLKNSGPATTSLLSSTTYPFDSLNAFNEPSHSHVPNSASSTALSR 211

Query: 544 GCGRPTITLLAPMPDTKKV 488
           G          P PD + +
Sbjct: 212 GMSNSVTLTAPPEPDEETI 230


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/52 (26%), Positives = 21/52 (40%)
 Frame = -2

Query: 640 TDAVTVEDRICARNAQTSSQGPNRSAATAHTLGCGRPTITLLAPMPDTKKVG 485
           TD + V + +   N    SQ P+  A T + L C      L  P   +  +G
Sbjct: 20  TDWIDVIETMRETNESPKSQNPSEEATTVNELSCEAKPKLLFTPTKSSLSIG 71


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -1

Query: 701 IQCTRCLAFGHGRKFCTESVDRCSHCGG-PHLREKCADFIAGTEPQCCNCSHSG 543
           + C  C ++GH  + CT  V +C  CG   H   +C    A     C  C+  G
Sbjct: 116 MNCYACGSYGHQARDCTMGV-KCYSCGKIGHRSFECQQ--ASDGQLCYKCNQPG 166


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 678 IWTWSKILHRECGQMQSLWRTASAREMRRLHRRDRTAVLQ 559
           IW+ S    RE  Q++  W + S  E R L + ++ AVLQ
Sbjct: 250 IWSSSNTEERE--QIREFWLSLSESERRSLVKVEKEAVLQ 287


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/46 (19%), Positives = 24/46 (52%)
 Frame = -1

Query: 530 DHNAFSADARYEKSGITWLALTQHMHNLNAGHYTARTHRHKAHRNK 393
           DH       +Y+ + + +++    MH+++A H  + +   K +++K
Sbjct: 331 DHAGEKFCLQYDPNSLLYISKAMDMHDMSASHQRSLSENRKKNQHK 376


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 489  TFFVSGIGAKSVMVGLPQPR 548
            TF  +G GAK+V +G+P+ R
Sbjct: 1213 TFHFAGFGAKNVTLGIPRLR 1232


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/35 (31%), Positives = 12/35 (34%)
 Frame = -1

Query: 659 FCTESVDRCSHCGGPHLREKCADFIAGTEPQCCNC 555
           FC   VD C+ C  P              P C NC
Sbjct: 74  FCKLCVDICNGCSTPICEFNAVSNSQANHPCCSNC 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,447,606
Number of Sequences: 5004
Number of extensions: 41120
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)