Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021701
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0087 + 20771329-20771450,20771462-20771771,20771893-207726...    30   2.2  
03_02_0097 + 5602912-5603293,5604599-5604676,5604935-5604963           29   3.0  
05_03_0201 - 9762563-9762843,9763037-9763919,9763988-9764036,980...    29   3.9  
06_03_0046 - 15852653-15854560                                         29   5.2  
08_02_1323 - 26136015-26137876,26138300-26139229,26139922-261400...    28   6.9  
10_05_0023 + 8171023-8171782,8172658-8172950                           28   9.1  

>09_06_0087 +
           20771329-20771450,20771462-20771771,20771893-20772672,
           20772854-20774002
          Length = 786

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -1

Query: 698 QCTRCLAFGHGRKFCTESVDRCSHCGGP-HLREKCADFIAGTEPQ 567
           +C RCL  GH +  C++    C  C  P H+   C   I  T P+
Sbjct: 70  RCFRCLGLGHLKASCSQP-PTCYRCWYPGHIERNCKVDIDATLPR 113


>03_02_0097 + 5602912-5603293,5604599-5604676,5604935-5604963
          Length = 162

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = -2

Query: 709 LRSSNARGASHLDMVENFAPRVWTDAVTVEDRICARNAQTSSQGPNRSAATAHTLGCGRP 530
           LR++ +R   H   +E   P V        D+ C R   +S+  P+R + + HTL  G+ 
Sbjct: 43  LRAALSRSPRHPSPLEPIPPPVHRRTPHHSDQ-CRRRTPSSAHRPDRHSPSPHTLVLGQM 101

Query: 529 TITLLA 512
             T +A
Sbjct: 102 GTTAVA 107


>05_03_0201 -
           9762563-9762843,9763037-9763919,9763988-9764036,
           9806710-9807680
          Length = 727

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -1

Query: 719 EDQSPLIQCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKC 597
           ED+     C+RC   GH    C  +   C HC   H  ++C
Sbjct: 185 EDEMERKACSRCGEIGHVASSCATT---CVHCEEDHPSDRC 222



 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -1

Query: 719 EDQSPLIQCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKC 597
           E++     CTRC   GH    C   +  C+HC   H   +C
Sbjct: 586 EEEMESKACTRCGEIGHVASMC---LTLCTHCEEDHPPGEC 623


>06_03_0046 - 15852653-15854560
          Length = 635

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 704 LIQCTRCLAFGHGRKFCTESVDRCSHC-GGPHLREKCA 594
           ++ CTRCL  GH    C+E V  C  C    H+   CA
Sbjct: 226 MLSCTRCLDKGHIASDCSEPV-WCHSCLEAGHMARFCA 262


>08_02_1323 -
           26136015-26137876,26138300-26139229,26139922-26140068,
           26140139-26140360,26140513-26140555
          Length = 1067

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +3

Query: 579 PCDEVCAFLAQMRSSTVTASVHTLGAKFSTMSKCEAPRALDERRLVLDSD 728
           PC+E    ++ M  S V   + T+G     +S  E P+A++E RLV DS+
Sbjct: 293 PCEET---VSSMEQSEV---MFTIGNNEDDLSCVERPKAVEEDRLVNDSN 336


>10_05_0023 + 8171023-8171782,8172658-8172950
          Length = 350

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -1

Query: 719 EDQSPLIQCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKC 597
           E++     CTRC   GH    C   +  C+HC   H   +C
Sbjct: 205 EEEMESKACTRCGEIGHVASMC---LTLCTHCEEDHPPGEC 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,946,511
Number of Sequences: 37544
Number of extensions: 287779
Number of successful extensions: 930
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)