Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021701
(746 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U19765-1|AAA91782.1| 177|Homo sapiens nucleic acid binding prot... 40 0.013
M28372-1|AAA61975.1| 177|Homo sapiens SRE-binding protein protein. 40 0.013
BC093058-1|AAH93058.1| 177|Homo sapiens CCHC-type zinc finger, ... 40 0.013
BC014911-1|AAH14911.1| 170|Homo sapiens CNBP protein protein. 40 0.013
BC000288-1|AAH00288.1| 170|Homo sapiens CNBP protein protein. 40 0.013
AY329622-1|AAR89462.1| 177|Homo sapiens zinc finger protein 9 p... 40 0.013
AK054592-1|BAB70769.1| 167|Homo sapiens protein ( Homo sapiens ... 40 0.013
DQ092367-1|AAY96755.1| 172|Homo sapiens cellular nucleic acid b... 31 4.4
DQ092366-1|AAY96754.1| 171|Homo sapiens cellular nucleic acid b... 31 4.4
DQ091187-1|AAY89856.1| 178|Homo sapiens cellular nucleic acid b... 31 4.4
BT019613-1|AAV38419.1| 178|Homo sapiens zinc finger protein 9 (... 31 4.4
AK124612-1|BAC85900.1| 722|Homo sapiens protein ( Homo sapiens ... 30 7.7
>U19765-1|AAA91782.1| 177|Homo sapiens nucleic acid binding protein
protein.
Length = 177
Score = 39.5 bits (88), Expect = 0.013
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = -1
Query: 695 CTRCLAFGHGRKFCTESVDRCSHCG-GPHLREKCADFIAGTEPQCCNCSHSG--LRKADH 525
C RC GH K C D C +CG G H+ + C + E C NC G R DH
Sbjct: 54 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDH 113
Score = 31.1 bits (67), Expect = 4.4
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -1
Query: 698 QCTRCLAFGHGRKFCTESVDRCSHCGGP-HLREKCADFIAGTEPQCCNCSHSG 543
+C C FGH +K CT+ +C CG H+ C+ +E C C SG
Sbjct: 118 KCYSCGEFGHIQKDCTKV--KCYRCGETGHVAINCS---KTSEVNCYRCGESG 165
>M28372-1|AAA61975.1| 177|Homo sapiens SRE-binding protein protein.
Length = 177
Score = 39.5 bits (88), Expect = 0.013
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = -1
Query: 695 CTRCLAFGHGRKFCTESVDRCSHCG-GPHLREKCADFIAGTEPQCCNCSHSG--LRKADH 525
C RC GH K C D C +CG G H+ + C + E C NC G R DH
Sbjct: 54 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDH 113
Score = 31.1 bits (67), Expect = 4.4
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -1
Query: 698 QCTRCLAFGHGRKFCTESVDRCSHCGGP-HLREKCADFIAGTEPQCCNCSHSG 543
+C C FGH +K CT+ +C CG H+ C+ +E C C SG
Sbjct: 118 KCYSCGEFGHIQKDCTKV--KCYRCGETGHVAINCS---KTSEVNCYRCGESG 165
>BC093058-1|AAH93058.1| 177|Homo sapiens CCHC-type zinc finger,
nucleic acid binding protein protein.
Length = 177
Score = 39.5 bits (88), Expect = 0.013
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = -1
Query: 695 CTRCLAFGHGRKFCTESVDRCSHCG-GPHLREKCADFIAGTEPQCCNCSHSG--LRKADH 525
C RC GH K C D C +CG G H+ + C + E C NC G R DH
Sbjct: 54 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDH 113
Score = 31.1 bits (67), Expect = 4.4
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -1
Query: 698 QCTRCLAFGHGRKFCTESVDRCSHCGGP-HLREKCADFIAGTEPQCCNCSHSG 543
+C C FGH +K CT+ +C CG H+ C+ +E C C SG
Sbjct: 118 KCYSCGEFGHIQKDCTKV--KCYRCGETGHVAINCS---KTSEVNCYRCGESG 165
>BC014911-1|AAH14911.1| 170|Homo sapiens CNBP protein protein.
Length = 170
Score = 39.5 bits (88), Expect = 0.013
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = -1
Query: 695 CTRCLAFGHGRKFCTESVDRCSHCG-GPHLREKCADFIAGTEPQCCNCSHSG--LRKADH 525
C RC GH K C D C +CG G H+ + C + E C NC G R DH
Sbjct: 47 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDH 106
Score = 31.1 bits (67), Expect = 4.4
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -1
Query: 698 QCTRCLAFGHGRKFCTESVDRCSHCGGP-HLREKCADFIAGTEPQCCNCSHSG 543
+C C FGH +K CT+ +C CG H+ C+ +E C C SG
Sbjct: 111 KCYSCGEFGHIQKDCTKV--KCYRCGETGHVAINCS---KTSEVNCYRCGESG 158
>BC000288-1|AAH00288.1| 170|Homo sapiens CNBP protein protein.
Length = 170
Score = 39.5 bits (88), Expect = 0.013
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = -1
Query: 695 CTRCLAFGHGRKFCTESVDRCSHCG-GPHLREKCADFIAGTEPQCCNCSHSG--LRKADH 525
C RC GH K C D C +CG G H+ + C + E C NC G R DH
Sbjct: 47 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDH 106
Score = 31.1 bits (67), Expect = 4.4
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -1
Query: 698 QCTRCLAFGHGRKFCTESVDRCSHCGGP-HLREKCADFIAGTEPQCCNCSHSG 543
+C C FGH +K CT+ +C CG H+ C+ +E C C SG
Sbjct: 111 KCYSCGEFGHIQKDCTKV--KCYRCGETGHVAINCS---KTSEVNCYRCGESG 158
>AY329622-1|AAR89462.1| 177|Homo sapiens zinc finger protein 9
protein.
Length = 177
Score = 39.5 bits (88), Expect = 0.013
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = -1
Query: 695 CTRCLAFGHGRKFCTESVDRCSHCG-GPHLREKCADFIAGTEPQCCNCSHSG--LRKADH 525
C RC GH K C D C +CG G H+ + C + E C NC G R DH
Sbjct: 54 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDH 113
Score = 31.1 bits (67), Expect = 4.4
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -1
Query: 698 QCTRCLAFGHGRKFCTESVDRCSHCGGP-HLREKCADFIAGTEPQCCNCSHSG 543
+C C FGH +K CT+ +C CG H+ C+ +E C C SG
Sbjct: 118 KCYSCGEFGHIQKDCTKV--KCYRCGETGHVAINCS---KTSEVNCYRCGESG 165
>AK054592-1|BAB70769.1| 167|Homo sapiens protein ( Homo sapiens
cDNA FLJ30030 fis, clone 3NB692001339, highly similar to
CELLULAR NUCLEIC ACID BINDING PROTEIN. ).
Length = 167
Score = 39.5 bits (88), Expect = 0.013
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = -1
Query: 695 CTRCLAFGHGRKFCTESVDRCSHCG-GPHLREKCADFIAGTEPQCCNCSHSG--LRKADH 525
C RC GH K C D C +CG G H+ + C + E C NC G R DH
Sbjct: 44 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDH 103
Score = 31.1 bits (67), Expect = 4.4
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -1
Query: 698 QCTRCLAFGHGRKFCTESVDRCSHCGGP-HLREKCADFIAGTEPQCCNCSHSG 543
+C C FGH +K CT+ +C CG H+ C+ +E C C SG
Sbjct: 108 KCYSCGEFGHIQKDCTKV--KCYRCGETGHVAINCS---KTSEVNCYRCGESG 155
>DQ092367-1|AAY96755.1| 172|Homo sapiens cellular nucleic acid
binding protein beta variant 2 protein.
Length = 172
Score = 31.1 bits (67), Expect = 4.4
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -1
Query: 698 QCTRCLAFGHGRKFCTESVDRCSHCGGP-HLREKCADFIAGTEPQCCNCSHSG 543
+C C FGH +K CT+ +C CG H+ C+ +E C C SG
Sbjct: 113 KCYSCGEFGHIQKDCTKV--KCYRCGETGHVAINCS---KTSEVNCYRCGESG 160
>DQ092366-1|AAY96754.1| 171|Homo sapiens cellular nucleic acid
binding protein beta variant 1 protein.
Length = 171
Score = 31.1 bits (67), Expect = 4.4
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -1
Query: 698 QCTRCLAFGHGRKFCTESVDRCSHCGGP-HLREKCADFIAGTEPQCCNCSHSG 543
+C C FGH +K CT+ +C CG H+ C+ +E C C SG
Sbjct: 112 KCYSCGEFGHIQKDCTKV--KCYRCGETGHVAINCS---KTSEVNCYRCGESG 159
>DQ091187-1|AAY89856.1| 178|Homo sapiens cellular nucleic acid
binding protein alpha variant 1 protein.
Length = 178
Score = 31.1 bits (67), Expect = 4.4
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -1
Query: 698 QCTRCLAFGHGRKFCTESVDRCSHCGGP-HLREKCADFIAGTEPQCCNCSHSG 543
+C C FGH +K CT+ +C CG H+ C+ +E C C SG
Sbjct: 119 KCYSCGEFGHIQKDCTKV--KCYRCGETGHVAINCS---KTSEVNCYRCGESG 166
>BT019613-1|AAV38419.1| 178|Homo sapiens zinc finger protein 9 (a
cellular retroviral nucleic acid binding protein)
protein.
Length = 178
Score = 31.1 bits (67), Expect = 4.4
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -1
Query: 698 QCTRCLAFGHGRKFCTESVDRCSHCGGP-HLREKCADFIAGTEPQCCNCSHSG 543
+C C FGH +K CT+ +C CG H+ C+ +E C C SG
Sbjct: 119 KCYSCGEFGHIQKDCTKV--KCYRCGETGHVAINCS---KTSEVNCYRCGESG 166
>AK124612-1|BAC85900.1| 722|Homo sapiens protein ( Homo sapiens
cDNA FLJ42621 fis, clone BRACE3015262. ).
Length = 722
Score = 30.3 bits (65), Expect = 7.7
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = -3
Query: 744 PGPAKDQSRGPVSAHPMHEVPRIWTWSKILHRECGQMQSLWRTASAREMRRLHRRDRTAV 565
PGP S GP H +W + G +++ AR++RRL RR R A+
Sbjct: 499 PGPPSPPSEGPRLGH-------LWQQRSTITHLLGNWKAIMAHVPARQLRRLSRRPRGAL 551
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,963,237
Number of Sequences: 237096
Number of extensions: 1622720
Number of successful extensions: 3831
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3831
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8959138240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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