Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021701
(746 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M14954-1|AAA70221.1| 426|Drosophila melanogaster putative ORF1 ... 43 5e-04
M38643-1|AAA28939.1| 549|Drosophila melanogaster protein ( D.me... 42 0.001
M22874-1|AAA28674.1| 583|Drosophila melanogaster nucleic acid-b... 42 0.001
AJ635224-1|CAG25619.1| 951|Drosophila melanogaster gag protein ... 42 0.001
AY118596-1|AAM49965.1| 165|Drosophila melanogaster LD48005p pro... 41 0.002
AY075371-1|AAL68216.1| 165|Drosophila melanogaster GM14667p pro... 41 0.002
AE013599-3513|AAN16117.1| 165|Drosophila melanogaster CG3800-PA... 41 0.002
X68130-1|CAA48237.1| 943|Drosophila melanogaster protein ( D.me... 40 0.003
U06920-1|AAC17188.3| 921|Drosophila melanogaster probable gag p... 40 0.003
AJ542581-1|CAD65868.3| 965|Drosophila melanogaster gag protein ... 40 0.004
M17214-1|AAA28507.1| 122|Drosophila melanogaster protein ( D.me... 39 0.008
X17551-1|CAA35586.1| 565|Drosophila melanogaster ORF1 for putat... 38 0.015
BT014916-1|AAT47767.1| 409|Drosophila melanogaster RE14563p pro... 38 0.015
U14101-1|AAC46493.1| 1043|Drosophila melanogaster putative singl... 37 0.034
AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein ... 37 0.034
AY561850-1|AAS68533.1| 970|Drosophila melanogaster gag protein ... 37 0.034
AY035777-1|AAK77970.1| 257|Drosophila melanogaster gag protein ... 37 0.034
AJ566116-1|CAD92792.1| 970|Drosophila melanogaster gag protein ... 37 0.034
AJ278684-1|CAB99191.1| 488|Drosophila melanogaster gag-like pro... 37 0.034
X68816-2|CAA48714.1| 536|Drosophila melanogaster T-element prot... 36 0.044
S56442-2|AAA14198.2| 536|Drosophila melanogaster Orf2 protein. 36 0.044
X51968-1|CAA36226.1| 471|Drosophila melanogaster protein ( Dros... 35 0.10
AF237761-1|AAF81410.1| 501|Drosophila melanogaster unknown prot... 35 0.10
AY118707-1|AAM50567.1| 186|Drosophila melanogaster AT22983p pro... 33 0.55
U26549-1|AAA67954.1| 296|Drosophila melanogaster zinc finger pr... 29 5.1
>M14954-1|AAA70221.1| 426|Drosophila melanogaster putative ORF1
protein.
Length = 426
Score = 42.7 bits (96), Expect = 5e-04
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 8/114 (7%)
Frame = -1
Query: 734 QRIRVEDQSPL-IQCTRCLAFGHGRKFCTESVDRCSHCG-GPHLR--EKCADFIAGTEPQ 567
+ +RV D PL ++C +CL FGH C +SV+ C +C H EKC + E
Sbjct: 174 ETVRVRDYIPLPLRCKKCLRFGHPTPIC-KSVETCINCSETKHTNDGEKCTN-----EKN 227
Query: 566 CCNCSHSGLRKADHNAFSADAR----YEKSGITWLALTQHMHNLNAGHYTARTH 417
C NC ++ + DH D + + +T + TQ + + A H H
Sbjct: 228 CLNCRNN--PELDHQHSPIDRKCPTFIKNQELTAIKTTQKVDHKTAQHIYFERH 279
>M38643-1|AAA28939.1| 549|Drosophila melanogaster protein (
D.melanogaster mobileelement jockey gag-specific protein
gene, complete cds.).
Length = 549
Score = 41.5 bits (93), Expect = 0.001
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 725 RVEDQSPLIQCTRCLAFGHGRKFCTESVDRCSHCGGPHL 609
R + L+QC RC FGH + +C + C C GPH+
Sbjct: 361 RATRRKELLQCQRCQIFGHSKNYCAQD-PICGKCSGPHM 398
>M22874-1|AAA28674.1| 583|Drosophila melanogaster nucleic
acid-binding protiein protein.
Length = 583
Score = 41.5 bits (93), Expect = 0.001
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 725 RVEDQSPLIQCTRCLAFGHGRKFCTESVDRCSHCGGPHL 609
R + L+QC RC FGH + +C + C C GPH+
Sbjct: 395 RATRRKELLQCQRCQIFGHSKNYCAQD-PICGKCSGPHM 432
>AJ635224-1|CAG25619.1| 951|Drosophila melanogaster gag protein
protein.
Length = 951
Score = 41.5 bits (93), Expect = 0.001
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = -1
Query: 734 QRIRVEDQSPL---IQCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKCADFIAGTEPQC 564
QR+ +E ++ +QC RC F H + C + RC C G HL C T C
Sbjct: 640 QRVDIERKNRTREPVQCYRCQGFRHAKNSCMKP-PRCMKCAGDHL-SSCCTKPRSTPATC 697
Query: 563 CNCS 552
NCS
Sbjct: 698 VNCS 701
>AY118596-1|AAM49965.1| 165|Drosophila melanogaster LD48005p
protein.
Length = 165
Score = 40.7 bits (91), Expect = 0.002
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -1
Query: 698 QCTRCLAFGHGRKFCTESVDRCSHCGG-PHLREKCADFIAGTEPQCCNCSHSG 543
+C +C FGH + C E +RC C G H+ + C P C C+ +G
Sbjct: 56 KCYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQ---ADNPTCYRCNKTG 105
Score = 33.1 bits (72), Expect = 0.41
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -1
Query: 722 VEDQSPL-IQCTRCLAFGHGRKFCTESVDRCSHCG-GPHLREKC 597
V ++ P + C +C GH K C E+ C CG HLR +C
Sbjct: 115 VNERGPTNVSCYKCNRTGHISKNCPETSKTCYGCGKSGHLRREC 158
>AY075371-1|AAL68216.1| 165|Drosophila melanogaster GM14667p
protein.
Length = 165
Score = 40.7 bits (91), Expect = 0.002
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -1
Query: 698 QCTRCLAFGHGRKFCTESVDRCSHCGG-PHLREKCADFIAGTEPQCCNCSHSG 543
+C +C FGH + C E +RC C G H+ + C P C C+ +G
Sbjct: 56 KCYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQ---ADNPTCYRCNKTG 105
Score = 33.1 bits (72), Expect = 0.41
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -1
Query: 722 VEDQSPL-IQCTRCLAFGHGRKFCTESVDRCSHCG-GPHLREKC 597
V ++ P + C +C GH K C E+ C CG HLR +C
Sbjct: 115 VNERGPTNVSCYKCNRTGHISKNCPETSKTCYGCGKSGHLRREC 158
>AE013599-3513|AAN16117.1| 165|Drosophila melanogaster CG3800-PA
protein.
Length = 165
Score = 40.7 bits (91), Expect = 0.002
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -1
Query: 698 QCTRCLAFGHGRKFCTESVDRCSHCGG-PHLREKCADFIAGTEPQCCNCSHSG 543
+C +C FGH + C E +RC C G H+ + C P C C+ +G
Sbjct: 56 KCYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQ---ADNPTCYRCNKTG 105
Score = 33.1 bits (72), Expect = 0.41
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -1
Query: 722 VEDQSPL-IQCTRCLAFGHGRKFCTESVDRCSHCG-GPHLREKC 597
V ++ P + C +C GH K C E+ C CG HLR +C
Sbjct: 115 VNERGPTNVSCYKCNRTGHISKNCPETSKTCYGCGKSGHLRREC 158
>X68130-1|CAA48237.1| 943|Drosophila melanogaster protein (
D.melanogaster DNA sequenceof Het-A transposable element
9D4. ).
Length = 943
Score = 40.3 bits (90), Expect = 0.003
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = -1
Query: 734 QRIRVEDQSPL---IQCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKCADFIAGTEPQC 564
QR+ +E ++ +QC RC F H + C RC C G HL C T C
Sbjct: 632 QRVDIERKNRTRDPVQCYRCQGFRHAKNSCMRP-PRCMKCAGEHL-SSCCTKPRTTPATC 689
Query: 563 CNCS 552
NCS
Sbjct: 690 VNCS 693
>U06920-1|AAC17188.3| 921|Drosophila melanogaster probable gag
protein protein.
Length = 921
Score = 40.3 bits (90), Expect = 0.003
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = -1
Query: 734 QRIRVEDQSPL---IQCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKCADFIAGTEPQC 564
QR+ +E ++ +QC RC F H + C RC C G HL C T C
Sbjct: 610 QRVDIERKNRTREPVQCYRCQGFRHAKNSCMRP-PRCMKCAGEHL-SSCCTKPRTTPATC 667
Query: 563 CNCS 552
NCS
Sbjct: 668 VNCS 671
>AJ542581-1|CAD65868.3| 965|Drosophila melanogaster gag protein
protein.
Length = 965
Score = 39.9 bits (89), Expect = 0.004
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = -1
Query: 734 QRIRVEDQSPL---IQCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKCADFIAGTEPQC 564
QR+ +E ++ +QC RC F H + C RC C G HL C T C
Sbjct: 647 QRVDIERKNRTREPVQCYRCQGFRHSKNSCMRP-PRCMKCAGGHL-SSCCTKPRTTPATC 704
Query: 563 CNCS 552
NCS
Sbjct: 705 VNCS 708
>M17214-1|AAA28507.1| 122|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 122
Score = 38.7 bits (86), Expect = 0.008
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = -1
Query: 734 QRIRVED---QSPLIQCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKC-ADFIAGTEPQ 567
+RI VE+ ++ +QCT C +GH R +CT C CG H ++C + E +
Sbjct: 24 RRITVEEPHKRNAPVQCTNCQEYGHTRSYCT-LAPVCVVCGDLHDSKQCQINKENACEKK 82
Query: 566 CCNC 555
C NC
Sbjct: 83 CNNC 86
>X17551-1|CAA35586.1| 565|Drosophila melanogaster ORF1 for putative
RNA bindingprotein protein.
Length = 565
Score = 37.9 bits (84), Expect = 0.015
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = -1
Query: 746 YLDLQRIRVEDQSPLI---QCTRCLAFGHGRKFCT-ESVDRCSHCGGPHLREKC-ADFIA 582
YL +RI VE+ I QCT C +GH + +CT +SV C C PH C +
Sbjct: 364 YLLHRRITVEEPHKRINPVQCTNCQEYGHTKAYCTLKSV--CVVCSEPHTTANCPKNKDD 421
Query: 581 GTEPQCCNC 555
+ +C NC
Sbjct: 422 KSVKKCSNC 430
>BT014916-1|AAT47767.1| 409|Drosophila melanogaster RE14563p
protein.
Length = 409
Score = 37.9 bits (84), Expect = 0.015
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = -1
Query: 746 YLDLQRIRVEDQSPLI---QCTRCLAFGHGRKFCT-ESVDRCSHCGGPHLREKC-ADFIA 582
YL +RI VE+ I QCT C +GH + +CT +SV C C PH C +
Sbjct: 208 YLLHRRITVEEPHKRINPVQCTNCQEYGHTKAYCTLKSV--CVVCSEPHTTANCPKNKDD 265
Query: 581 GTEPQCCNC 555
+ +C NC
Sbjct: 266 KSVKKCSNC 274
>U14101-1|AAC46493.1| 1043|Drosophila melanogaster putative
single-stranded nucleicacid binding protein protein.
Length = 1043
Score = 36.7 bits (81), Expect = 0.034
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = -1
Query: 698 QCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKCADFIAGTEPQCCNCSHS 546
QC RC FGH + +C +C CG H C C NC+ S
Sbjct: 794 QCHRCQCFGHTKNYCRNPF-KCMKCGQLHATVSCTK-PKNLPATCANCNGS 842
>AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein
protein.
Length = 1047
Score = 36.7 bits (81), Expect = 0.034
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = -1
Query: 698 QCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKCADFIAGTEPQCCNCSHS 546
QC RC FGH + +C +C CG H C C NC+ S
Sbjct: 794 QCHRCQCFGHTKNYCRNPF-KCMKCGQLHASVSCTK-PKNLPATCANCNGS 842
>AY561850-1|AAS68533.1| 970|Drosophila melanogaster gag protein
protein.
Length = 970
Score = 36.7 bits (81), Expect = 0.034
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = -1
Query: 698 QCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKCADFIAGTEPQCCNCSHS 546
QC RC FGH + +C +C CG H C C NC+ S
Sbjct: 717 QCHRCQCFGHTKNYCRNPF-KCMKCGQLHATVSCTK-PKNLPATCANCNGS 765
>AY035777-1|AAK77970.1| 257|Drosophila melanogaster gag protein
protein.
Length = 257
Score = 36.7 bits (81), Expect = 0.034
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = -1
Query: 698 QCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKCADFIAGTEPQCCNCSHS 546
QC RC FGH + +C +C CG H C C NC+ S
Sbjct: 4 QCHRCQCFGHTKNYCRNPF-KCMKCGQLHATVSCTK-PKNLPATCANCNGS 52
>AJ566116-1|CAD92792.1| 970|Drosophila melanogaster gag protein
protein.
Length = 970
Score = 36.7 bits (81), Expect = 0.034
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = -1
Query: 698 QCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKCADFIAGTEPQCCNCSHS 546
QC RC FGH + +C +C CG H C C NC+ S
Sbjct: 717 QCHRCQCFGHTKNYCRNPF-KCMKCGQLHATVSCTK-PKNLPATCANCNGS 765
>AJ278684-1|CAB99191.1| 488|Drosophila melanogaster gag-like
protein protein.
Length = 488
Score = 36.7 bits (81), Expect = 0.034
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = -1
Query: 731 RIRVEDQSPLIQCTRCLAFGHGRKFCTESVDR---CSHCG-GPHLREKCADFIAGTEPQC 564
R R+ I+C RCL FGH +C +SVDR C CG H + C P+C
Sbjct: 397 RCRIAQDVRPIRCFRCLEFGHRAPYC-KSVDRSDCCLRCGEHGHKAKGCV-----APPRC 450
Query: 563 CNCS 552
CS
Sbjct: 451 LICS 454
>X68816-2|CAA48714.1| 536|Drosophila melanogaster T-element
protein.
Length = 536
Score = 36.3 bits (80), Expect = 0.044
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = -1
Query: 734 QRIRVEDQSPL---IQCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKCADFIAGTEPQC 564
QR+ +E ++ +QC RC F H + C RC G HL C T C
Sbjct: 225 QRVDIERKNRTREPVQCYRCQGFRHAKNSCMRP-PRCMKSAGEHL-SSCCTKPRTTPATC 282
Query: 563 CNCS 552
NCS
Sbjct: 283 VNCS 286
>S56442-2|AAA14198.2| 536|Drosophila melanogaster Orf2 protein.
Length = 536
Score = 36.3 bits (80), Expect = 0.044
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = -1
Query: 734 QRIRVEDQSPL---IQCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKCADFIAGTEPQC 564
QR+ +E ++ +QC RC F H + C RC G HL C T C
Sbjct: 225 QRVDIERKNRTREPVQCYRCQGFRHAKNSCMRP-PRCMKSAGEHL-SSCCTKPRTTPATC 282
Query: 563 CNCS 552
NCS
Sbjct: 283 VNCS 286
>X51968-1|CAA36226.1| 471|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 471
Score = 35.1 bits (77), Expect = 0.10
Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Frame = -1
Query: 746 YLDLQRIRVEDQSPLIQCTRCLAFGHGRKFCTESVDRCSHCGGP-HLREKCADFIAGTEP 570
Y+ R Q C RC+ F H C + C CG H KC + +
Sbjct: 382 YIKWFSFRCRSQVRTYACHRCVGFDHKVSECRQKESVCRQCGQQGHTAAKCQNPV----- 436
Query: 569 QCCNCSHSG 543
C NC H G
Sbjct: 437 DCRNCRHRG 445
>AF237761-1|AAF81410.1| 501|Drosophila melanogaster unknown
protein.
Length = 501
Score = 35.1 bits (77), Expect = 0.10
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -1
Query: 713 QSPLIQCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKCADFIAGTEP--QCCNCSHSG 543
++ ++QC RC GH K+C ++ C C G H + C T P + C C + G
Sbjct: 281 RNAIVQCHRCQQIGHTAKYCRKA-HICVKCAGEHPAKDC------TRPRIELCTCYNCG 332
>AY118707-1|AAM50567.1| 186|Drosophila melanogaster AT22983p
protein.
Length = 186
Score = 32.7 bits (71), Expect = 0.55
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = -1
Query: 722 VEDQSPLIQCTRCLAFGHGRKFCTESVDR---CSHCGGPHLREKCADFIAGTEPQCCNCS 552
+++ P +C RCL GH C +VDR C CG + +C E +C C+
Sbjct: 91 IKELEPRQRCFRCLEEGHIAAHCRSTVDRSQCCFRCGTAGHKAECP-----KEAKCFLCA 145
Query: 551 HSG 543
G
Sbjct: 146 SRG 148
>U26549-1|AAA67954.1| 296|Drosophila melanogaster zinc finger
protein protein.
Length = 296
Score = 29.5 bits (63), Expect = 5.1
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -1
Query: 629 HCGGPHLREK-CADFIAGTEPQCCNCSH 549
HC HLR C D++AG P+ +C H
Sbjct: 139 HCRHQHLRRVLCMDYLAGFCPEAPSCKH 166
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,358,305
Number of Sequences: 53049
Number of extensions: 510799
Number of successful extensions: 1968
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1959
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3396574665
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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