Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021701
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF079509-1|AAC28388.1|  720|Caenorhabditis elegans germline RNA ...    31   0.66 
AF003145-4|AAB57719.1|  720|Caenorhabditis elegans Germ-line hel...    31   0.66 
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z81468-2|CAN99666.1|  950|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AL117206-4|CAB60447.1|  447|Caenorhabditis elegans Hypothetical ...    28   6.1  
AF100662-1|AAC68977.1|  900|Caenorhabditis elegans Hypothetical ...    28   8.1  

>AF079509-1|AAC28388.1|  720|Caenorhabditis elegans germline RNA
           helicase-3 protein.
          Length = 720

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -1

Query: 695 CTRCLAFGHGRKFCTESVDRCSHCGGP-HLREKCADF 588
           C  C  +GH    C+     C++CG P H   +CA +
Sbjct: 204 CFNCKKYGHRATECSAPQRECANCGDPNHRANECASW 240


>AF003145-4|AAB57719.1|  720|Caenorhabditis elegans Germ-line
           helicase protein 3 protein.
          Length = 720

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -1

Query: 695 CTRCLAFGHGRKFCTESVDRCSHCGGP-HLREKCADF 588
           C  C  +GH    C+     C++CG P H   +CA +
Sbjct: 204 CFNCKKYGHRATECSAPQRECANCGDPNHRANECASW 240


>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
           protein R52.2 protein.
          Length = 1019

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 725 RVEDQSPLIQCTRCLAFGHGRKFCTESVDRCSHCGGPH 612
           R++    +  C  CL  GH R  C+     C+HC G H
Sbjct: 338 RIQKAREIGLCFGCLRSGHQRSKCSRP-RTCNHCKGNH 374


>Z81468-2|CAN99666.1|  950|Caenorhabditis elegans Hypothetical protein
            C13B4.1b protein.
          Length = 950

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -1

Query: 614  HLREKCADFIAGTEPQCCNCSHSGLRKADHNAFSADARY 498
            + R+ C   +     QCC C H  + K D  +F  + RY
Sbjct: 905  NFRDLCIIIVLYNFQQCCRCGHKVIYK-DERSFGQNRRY 942


>AL117206-4|CAB60447.1|  447|Caenorhabditis elegans Hypothetical
           protein Y67A10A.6 protein.
          Length = 447

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
 Frame = -1

Query: 746 YLDLQRI-RVEDQSPLIQCTRCLAFGHGRKF-CTE-SVDRCSHCGGPHLREKCADFIAGT 576
           ++D  R+  +   S +  C+ C + G    F C     D+CS C G  ++   A     T
Sbjct: 128 FVDQVRVFEMPGSSQINPCSACNSDGTIHCFHCRGYGTDKCSFCRGTGMKSGVAHPAVYT 187

Query: 575 EPQCCNCSHSGLRKADHNAFSADARYEKSG 486
            P      H+ L +   ++ +A  R+  SG
Sbjct: 188 HPMIATFPHADLSRGYASSSTAMVRHGGSG 217


>AF100662-1|AAC68977.1|  900|Caenorhabditis elegans Hypothetical
           protein H34C03.2 protein.
          Length = 900

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -1

Query: 512 ADARYEKSGITWLALTQHMHNLNAGHYTA 426
           A+  +EK+    +A+++H  +L+ GHYTA
Sbjct: 778 ANPNHEKAIYDLIAVSRHYGSLSGGHYTA 806


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,012,842
Number of Sequences: 27780
Number of extensions: 253888
Number of successful extensions: 749
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)