Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021701
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27990.1 68415.m03392 homeodomain-containing protein                30   1.4  
At1g11300.1 68414.m01298 S-locus lectin protein kinase family pr...    30   1.4  
At3g03260.1 68416.m00322 homeobox-leucine zipper family protein ...    30   1.9  
At5g05190.1 68418.m00553 expressed protein similar to unknown pr...    29   3.3  
At3g52100.1 68416.m05717 PHD finger family protein contains Pfam...    27   10.0 
At1g51190.1 68414.m05758 ovule development protein, putative sim...    27   10.0 

>At2g27990.1 68415.m03392 homeodomain-containing protein 
          Length = 584

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 25/87 (28%), Positives = 42/87 (48%)
 Frame = -2

Query: 745 TWTCKGSESRTSLRSSNARGASHLDMVENFAPRVWTDAVTVEDRICARNAQTSSQGPNRS 566
           T  C G+ +   LRSS  +G+S       F+        ++E++  A NA   + GP   
Sbjct: 159 TVACSGTGNEI-LRSSYDQGSSSGSYRGEFS-----FLPSLENQSVAHNASNWNHGPVNV 212

Query: 565 AATAHTLGCGRPTITLLAPMPDTKKVG 485
            AT+HT       ++LL+ +P ++ VG
Sbjct: 213 TATSHTNSKKGFPLSLLSDIPPSRDVG 239


>At1g11300.1 68414.m01298 S-locus lectin protein kinase family
           protein contains protein kinase domain, Pfam:PF00069;
           contains S-locus glycoprotein family domain,
           Pfam:PF00954
          Length = 1635

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
 Frame = +1

Query: 499 YRASALKALWSAFRNPECEQLQHCGSVPAMKSAHFSRRCGP-----PQ*LHLSTLSVQNF 663
           YR S ++  WS  R      LQ    VPA +  ++ RRCG      P+   L +  ++ F
Sbjct: 267 YRGSVIRRDWSETRRNWTVGLQ----VPATECDNY-RRCGEFATCNPRKNPLCSC-IRGF 320

Query: 664 RPCPNARHLVHWMSGDWS 717
           RP    R+L+ W +G+WS
Sbjct: 321 RP----RNLIEWNNGNWS 334



 Score = 29.5 bits (63), Expect = 2.5
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
 Frame = +1

Query: 499  YRASALKALWSAFRNPECEQLQHCGS-VPAMKSAHFSR-----RCGPPQ*LHLSTLSVQN 660
            YR  A++  WS     E  +    GS VPA +   +SR      C P +  H S   ++ 
Sbjct: 1082 YRGFAIRRDWS-----EARRNWTLGSQVPATECDIYSRCGQYTTCNPRKNPHCSC--IKG 1134

Query: 661  FRPCPNARHLVHWMSGDWSSTLI 729
            FRP    R+L+ W +G+WS   I
Sbjct: 1135 FRP----RNLIEWNNGNWSGGCI 1153


>At3g03260.1 68416.m00322 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           L1 specific homeobox gene ATML1/ovule-specific homeobox
           protein A20, GB:CAB36819
          Length = 699

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
 Frame = -2

Query: 709 LRSSNARGASHLDMVENFAPRVWTDAVTVEDRIC-ARNAQTSSQGPNRSAATAHTLGCGR 533
           LR  NAR   H D + NF  +   +  TVED +    +    S G N       +   G 
Sbjct: 133 LRFENARLKDHRDRISNFVDQHKPNEPTVEDSLAYVPSLDRISYGINGGNMYEPSSSYGP 192

Query: 532 PTITLLAPMP 503
           P   ++ P P
Sbjct: 193 PNFQIIQPRP 202


>At5g05190.1 68418.m00553 expressed protein similar to unknown
           protein (emb|CAB88044.1)
          Length = 615

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 567 LRFGPCDEVCAFLAQMRSSTVTASVHTLGAKFSTMSKCEAP 689
           LR G C  V  F  Q R+  V A  H + A  ++ S  E+P
Sbjct: 525 LRCGTCTTVLRFSLQSRNHLVPAVTHDINANRNSNSTSESP 565


>At3g52100.1 68416.m05717 PHD finger family protein contains Pfam
           profile PF00628: PHD-finger
          Length = 696

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 526 WSAFRNPECEQLQHCGSVPAMKSAHFSRRC 615
           WS++  P C   + CG++   K   F +RC
Sbjct: 205 WSSWACPSCRICEGCGTLGDPKKFMFCKRC 234


>At1g51190.1 68414.m05758 ovule development protein, putative
           similar to ovule development protein AINTEGUMENTA
           (GI:1209099) [Arabidopsis thaliana]
          Length = 568

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 354 NTNDIQNVY*IYTIISAQKHLHEPQT 277
           N NDI   +  ++ I  Q HLH+ QT
Sbjct: 442 NNNDISQYHDSFSYIQTQLHLHQQQT 467


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,806,393
Number of Sequences: 28952
Number of extensions: 221863
Number of successful extensions: 647
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)