Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021695
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.2  
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces...    25   9.7  
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    25   9.7  

>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 287

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 245 MLQPVVDARLQGYRQQGTQLRAICIRGAFQRNVNE-GFRFLYL*NAIY 385
           ML+P V  R+  + Q    L       A Q+ VN+  +RF  + +++Y
Sbjct: 237 MLKPFVSQRIDAFSQDPILLAVTAKLSALQKKVNDVSYRFKTISSSLY 284


>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 19  EDEKPNDEKQNEPQANSKK 75
           EDE+ ++EKQ  P   SKK
Sbjct: 224 EDEEGDEEKQEPPSKKSKK 242


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 358 VFIFIKRYIHYQKKLRKSVIRV 423
           VF F  RY   Q+ LRKS+IRV
Sbjct: 141 VFPFPWRYRSSQRGLRKSIIRV 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,800,584
Number of Sequences: 5004
Number of extensions: 26120
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)