Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021695
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_58957| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 10/23 (43%), Positives = 19/23 (82%)
 Frame = +1

Query: 19  EDEKPNDEKQNEPQANSKKDEGE 87
           E+EK N+E++NE + + +++EGE
Sbjct: 70  EEEKENEEEENEDEEDEEEEEGE 92



 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 4   KGDNIEDEKPNDEKQNEPQANSKKDEGEQ 90
           K D IE E+  +EK+NE + N  +++ E+
Sbjct: 60  KEDEIEVEEEEEEKENEEEENEDEEDEEE 88


>SB_58957| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 626

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 294 EHSFELFVFAELFNEMLMRDFGFYIYKTLYTLPEKT 401
           E   ++F+FA+ FN   +  +  ++  T YT+ EKT
Sbjct: 182 ESILDVFMFAKAFNSQYLTMWCLHVIATNYTIFEKT 217


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,259,551
Number of Sequences: 59808
Number of extensions: 185361
Number of successful extensions: 722
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)