Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021695
(661 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains... 34 0.073
At4g04010.1 68417.m00571 Ulp1 protease family protein contains P... 30 1.2
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 29 2.7
At4g26630.1 68417.m03837 expressed protein 28 4.8
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 28 6.3
At3g47260.1 68416.m05133 Ulp1 protease family protein contains P... 28 6.3
At3g30440.1 68416.m03851 Ulp1 protease family protein contains P... 28 6.3
At3g29210.1 68416.m03664 hypothetical protein similar to At1g328... 28 6.3
At1g32840.1 68414.m04047 Ulp1 protease family protein similar to... 28 6.3
>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 1340
Score = 34.3 bits (75), Expect = 0.073
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +3
Query: 252 NLSWMLDYRVTDNKEHSFELFVFAELFNEMLMRDFGFYIYKTLYTLPEK 398
+L +LDY D E SFE+ +FAE EML G I++ L L K
Sbjct: 1010 SLDSLLDYTDKDLDESSFEISLFAESLYEMLQYQMGSRIFEFLKKLRVK 1058
>At4g04010.1 68417.m00571 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At1g32840, At2g06430,
At2g15140, At2g04980, At2g14130, At3g44500, At2g15190,
At3g47260, At5g34900, At3g29210, At2g02210, At3g32900
Length = 836
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 1 NKGDNIEDEKPNDEKQNEPQANSKK 75
N GDN +++ ND+ Q PQ NSK+
Sbjct: 543 NDGDNADNDGDNDDFQPAPQRNSKR 567
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 13 NIEDEKPNDEKQNEPQANSKKDEGEQ 90
N+ED N K+NE NS KD +
Sbjct: 303 NVEDSDKNTSKENEDSGNSNKDNASK 328
>At4g26630.1 68417.m03837 expressed protein
Length = 763
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 10 DNIEDEKPNDEKQNEPQANSKKDEGEQ 90
D E+EK +EKQ E +A K+++ E+
Sbjct: 521 DESEEEKEEEEKQEEEKAEEKEEKKEE 547
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 157 NLKSRYEIPNSPHILVHPSA-TAKAGK 234
+L YE+PN P VH S T +AGK
Sbjct: 420 DLVIHYELPNDPETFVHRSGRTGRAGK 446
>At3g47260.1 68416.m05133 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At1g32840, At4g04010,
At2g06430, At2g15140, At2g04980, At2g14130, At3g44500,
At2g15190, At5g34900, At3g29210, At2g02210, At3g32900
Length = 820
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 1 NKGDNIEDEKPNDEKQNEPQANSKK 75
N GDN +++ ND+ Q PQ SK+
Sbjct: 571 NDGDNADNDGDNDDFQPAPQRKSKR 595
>At3g30440.1 68416.m03851 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 601
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 1 NKGDNIEDEKPNDEKQNEPQANSKK 75
N GDN +++ ND+ Q PQ SK+
Sbjct: 331 NDGDNADNDGDNDDFQPAPQRKSKR 355
>At3g29210.1 68416.m03664 hypothetical protein similar to At1g32840,
At4g04010, At2g06430, At2g15140, At2g04980, At2g14130,
At3g44500, At2g15190, At3g47260, At5g34900, At2g02210,
At3g32900
Length = 594
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 1 NKGDNIEDEKPNDEKQNEPQANSKK 75
N GDN +++ ND+ Q PQ SK+
Sbjct: 533 NDGDNADNDGDNDDFQPAPQRKSKR 557
>At1g32840.1 68414.m04047 Ulp1 protease family protein similar to
At4g04010, At2g06430, At2g15140, At2g04980, At2g14130,
At3g44500, At2g15190, At3g47260, At5g34900, At3g29210,
At2g02210, At3g32900
Length = 611
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 1 NKGDNIEDEKPNDEKQNEPQANSKK 75
N GDN +++ ND+ Q PQ SK+
Sbjct: 326 NDGDNADNDGDNDDFQPAPQRKSKR 350
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,316,857
Number of Sequences: 28952
Number of extensions: 133021
Number of successful extensions: 450
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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