Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021694
         (662 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q16TQ0 Cluster: Ubiquitin specific protease; n=2; Culic...   124   3e-27
UniRef50_A7S8P2 Cluster: Predicted protein; n=1; Nematostella ve...    82   1e-14
UniRef50_Q4RYN3 Cluster: Chromosome 16 SCAF14974, whole genome s...    79   7e-14
UniRef50_Q8NFA0 Cluster: Ubiquitin carboxyl-terminal hydrolase 3...    79   1e-13
UniRef50_Q9VW49 Cluster: CG8334-PA; n=3; Eukaryota|Rep: CG8334-P...    56   8e-07
UniRef50_UPI0000E49CE8 Cluster: PREDICTED: similar to ENSANGP000...    34   3.5  
UniRef50_Q9VM64 Cluster: CG9211-PA; n=8; Sophophora|Rep: CG9211-...    33   4.6  
UniRef50_A5GS22 Cluster: Sensor protein; n=1; Synechococcus sp. ...    33   6.1  
UniRef50_Q8WT44 Cluster: Cytokinesis defect protein 3, isoform b...    33   6.1  

>UniRef50_Q16TQ0 Cluster: Ubiquitin specific protease; n=2;
           Culicidae|Rep: Ubiquitin specific protease - Aedes
           aegypti (Yellowfever mosquito)
          Length = 1801

 Score =  124 bits (298), Expect = 3e-27
 Identities = 65/124 (52%), Positives = 80/124 (64%), Gaps = 2/124 (1%)
 Frame = +3

Query: 9   MGAKDSKPSFITYEDAVKRVSDSELRRIREAFKRCAGANGTALSLEAFVHEVLCDGVPYD 188
           MGAKDS+PS I+YEDAVKRV+D ELRRI++AFKR AG +GT LS  AFV +VL DGVP  
Sbjct: 1   MGAKDSRPSCISYEDAVKRVTDPELRRIKDAFKRSAGTSGTVLSKSAFVQDVLGDGVPTV 60

Query: 189 VAEWLYQACGGTKRGIAFKEXXXXXXXXXRATWRRK*SFCGP--CM*TIKEIMAHTYIKR 362
           VA+WLY ACGGT +GI FKE         + T   K  F     C  +   I+   ++K 
Sbjct: 61  VADWLYAACGGTPKGITFKELLCGLVLLTKGTQEEKIRFLWNLYCNESGTHILKQEFLKA 120

Query: 363 ILLE 374
           I +E
Sbjct: 121 IQIE 124



 Score = 75.4 bits (177), Expect = 1e-12
 Identities = 38/83 (45%), Positives = 58/83 (69%)
 Frame = +2

Query: 257 GIVVLTKGNLEEKIKFLWTLYVNNQGDNGSYIYKKDFARALHLENTSLPATAAQRSAEIL 436
           G+V+LTKG  EEKI+FLW LY N   ++G++I K++F +A+ +E T+LP        +  
Sbjct: 84  GLVLLTKGTQEEKIRFLWNLYCN---ESGTHILKQEFLKAIQIE-TALP--------KYT 131

Query: 437 LGLFGAGDKVTFDQFRSWLLIHK 505
           + LFG  D+VTF+QF+SW+ I+K
Sbjct: 132 VALFGLNDRVTFEQFKSWIQIYK 154



 Score = 54.8 bits (126), Expect = 2e-06
 Identities = 27/38 (71%), Positives = 32/38 (84%), Gaps = 2/38 (5%)
 Frame = +1

Query: 508 STVLSKWLLSE--VNDVYDLETPTFYQTLAGVTHLEER 615
           +TVLSKWLL +  VN   +LETPTFYQ+LAGVTHLEE+
Sbjct: 156 ATVLSKWLLQDACVNLSSELETPTFYQSLAGVTHLEEQ 193


>UniRef50_A7S8P2 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 1526

 Score = 81.8 bits (193), Expect = 1e-14
 Identities = 42/99 (42%), Positives = 59/99 (59%)
 Frame = +3

Query: 9   MGAKDSKPSFITYEDAVKRVSDSELRRIREAFKRCAGANGTALSLEAFVHEVLCDGVPYD 188
           MG ++SK  F+ YE+AVKRV++ E++R+R AFKR +G +G  +    F  EVL DGVP  
Sbjct: 1   MGLRESKLCFLPYEEAVKRVTEEEMQRLRLAFKRSSGVSG-LMPQNMFSREVLGDGVPSK 59

Query: 189 VAEWLYQACGGTKRGIAFKEXXXXXXXXXRATWRRK*SF 305
           V E +Y A GGT +G+ F++         R T   K  F
Sbjct: 60  VCEQIYGAIGGTGKGVTFRDLLCGLVLLTRGTREEKIKF 98



 Score = 50.4 bits (115), Expect = 4e-05
 Identities = 30/85 (35%), Positives = 48/85 (56%)
 Frame = +2

Query: 257 GIVVLTKGNLEEKIKFLWTLYVNNQGDNGSYIYKKDFARALHLENTSLPATAAQRSAEIL 436
           G+V+LT+G  EEKIKF++ +Y      +G+Y+  KD   +L L      A       +++
Sbjct: 83  GLVLLTRGTREEKIKFIFNVY----SSDGTYV-TKDCIESLIL------ACDGGNIPQVV 131

Query: 437 LGLFGAGDKVTFDQFRSWLLIHKDL 511
             +F   D++TFD+F  WLL H D+
Sbjct: 132 SDVFSEVDRLTFDEFSHWLLKHPDV 156



 Score = 37.5 bits (83), Expect = 0.28
 Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 5/39 (12%)
 Frame = +1

Query: 511 TVLSKWLL-----SEVNDVYDLETPTFYQTLAGVTHLEE 612
           T L++WLL       +    + ETPTFYQTLA VTHL+E
Sbjct: 157 TTLTRWLLIVSSGCSLQLTDNSETPTFYQTLATVTHLQE 195


>UniRef50_Q4RYN3 Cluster: Chromosome 16 SCAF14974, whole genome
           shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 16
           SCAF14974, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 1669

 Score = 79.4 bits (187), Expect = 7e-14
 Identities = 37/79 (46%), Positives = 58/79 (73%)
 Frame = +3

Query: 6   NMGAKDSKPSFITYEDAVKRVSDSELRRIREAFKRCAGANGTALSLEAFVHEVLCDGVPY 185
           +MGAK+S+  F++Y++AVKRV+D EL+R+++AFKR +G     ++ + F  EVL DGVP 
Sbjct: 4   SMGAKESRIGFLSYDEAVKRVTDVELKRLKDAFKRTSGLT-CYMTQQCFFREVLGDGVPP 62

Query: 186 DVAEWLYQACGGTKRGIAF 242
            VAE +Y + GG+ +G+ F
Sbjct: 63  KVAEVIYTSFGGSSKGLHF 81



 Score = 46.0 bits (104), Expect = 8e-04
 Identities = 24/35 (68%), Positives = 26/35 (74%), Gaps = 3/35 (8%)
 Frame = +1

Query: 517 LSKWLLSE---VNDVYDLETPTFYQTLAGVTHLEE 612
           LS+WLLS    V    D +TPTFYQTLAGVTHLEE
Sbjct: 161 LSRWLLSGGVCVTLTDDSDTPTFYQTLAGVTHLEE 195



 Score = 44.0 bits (99), Expect = 0.003
 Identities = 31/94 (32%), Positives = 48/94 (51%)
 Frame = +2

Query: 227 KGNRIQGTPRGIVVLTKGNLEEKIKFLWTLYVNNQGDNGSYIYKKDFARALHLENTSLPA 406
           KG        G+V+LT+G  EEK K   TL+ +   D G Y  ++D    L + +   PA
Sbjct: 77  KGLHFNNLIVGLVLLTRGRDEEKSKC--TLFAS---DLGGYAAREDIEAVLRILDGETPA 131

Query: 407 TAAQRSAEILLGLFGAGDKVTFDQFRSWLLIHKD 508
           +        L   F   DKV++++FR+WL ++KD
Sbjct: 132 S--------LQKCFLESDKVSYERFRAWLFLNKD 157


>UniRef50_Q8NFA0 Cluster: Ubiquitin carboxyl-terminal hydrolase 32;
           n=59; Euteleostomi|Rep: Ubiquitin carboxyl-terminal
           hydrolase 32 - Homo sapiens (Human)
          Length = 1604

 Score = 78.6 bits (185), Expect = 1e-13
 Identities = 37/78 (47%), Positives = 56/78 (71%)
 Frame = +3

Query: 9   MGAKDSKPSFITYEDAVKRVSDSELRRIREAFKRCAGANGTALSLEAFVHEVLCDGVPYD 188
           MGAK+S+  F++YE+A++RV+D EL+R+++AFKR  G +   +    F+ EVL DGVP  
Sbjct: 1   MGAKESRIGFLSYEEALRRVTDVELKRLKDAFKRTCGLS-YYMGQHCFIREVLGDGVPPK 59

Query: 189 VAEWLYQACGGTKRGIAF 242
           VAE +Y + GGT +G+ F
Sbjct: 60  VAEVIYCSFGGTSKGLHF 77



 Score = 58.8 bits (136), Expect = 1e-07
 Identities = 30/94 (31%), Positives = 55/94 (58%)
 Frame = +2

Query: 227 KGNRIQGTPRGIVVLTKGNLEEKIKFLWTLYVNNQGDNGSYIYKKDFARALHLENTSLPA 406
           KG        G+V+LT+G  EEK K++++L+     ++G+Y+ +++  R LH+ +  +P 
Sbjct: 73  KGLHFNNLIVGLVLLTRGKDEEKAKYIFSLF---SSESGNYVIREEMERMLHVVDGKVPD 129

Query: 407 TAAQRSAEILLGLFGAGDKVTFDQFRSWLLIHKD 508
           T        L   F  G+KV +++FR+WL ++KD
Sbjct: 130 T--------LRKCFSEGEKVNYEKFRNWLFLNKD 155



 Score = 44.4 bits (100), Expect = 0.002
 Identities = 23/34 (67%), Positives = 25/34 (73%), Gaps = 3/34 (8%)
 Frame = +1

Query: 520 SKWLLSE---VNDVYDLETPTFYQTLAGVTHLEE 612
           S+WLLS    V    D +TPTFYQTLAGVTHLEE
Sbjct: 160 SRWLLSGGVYVTLTDDSDTPTFYQTLAGVTHLEE 193


>UniRef50_Q9VW49 Cluster: CG8334-PA; n=3; Eukaryota|Rep: CG8334-PA -
           Drosophila melanogaster (Fruit fly)
          Length = 1736

 Score = 56.0 bits (129), Expect = 8e-07
 Identities = 27/40 (67%), Positives = 34/40 (85%), Gaps = 2/40 (5%)
 Frame = +1

Query: 502 QRSTVLSKWLLSE--VNDVYDLETPTFYQTLAGVTHLEER 615
           + +TVLSKWLLS+  V+   +LETPTFYQ+LAGVTHLEE+
Sbjct: 88  RNATVLSKWLLSDNCVSLTSELETPTFYQSLAGVTHLEEK 127



 Score = 54.4 bits (125), Expect = 2e-06
 Identities = 31/95 (32%), Positives = 51/95 (53%)
 Frame = +2

Query: 224 QKGNRIQGTPRGIVVLTKGNLEEKIKFLWTLYVNNQGDNGSYIYKKDFARALHLENTSLP 403
           Q+G        G+V++T+G   EK KFLW LY N   D G++I K D+ R ++L     P
Sbjct: 10  QRGISFNDLLCGLVLITRGTQAEKTKFLWNLYCN---DAGTFIIKSDYVRNVNL----AP 62

Query: 404 ATAAQRSAEILLGLFGAGDKVTFDQFRSWLLIHKD 508
             +        + LF   ++V F+QF+ W++ H++
Sbjct: 63  FES--------VSLFAQSERVNFEQFQDWIIKHRN 89



 Score = 32.7 bits (71), Expect = 8.1
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +3

Query: 201 LYQACGGTKRGIAFKEXXXXXXXXXRATWRRK*SFCGP--CM*TIKEIMAHTYIKRILLE 374
           LY ACGGT+RGI+F +         R T   K  F     C      I+   Y++ + L 
Sbjct: 2   LYAACGGTQRGISFNDLLCGLVLITRGTQAEKTKFLWNLYCNDAGTFIIKSDYVRNVNLA 61

Query: 375 P 377
           P
Sbjct: 62  P 62


>UniRef50_UPI0000E49CE8 Cluster: PREDICTED: similar to
           ENSANGP00000009880, partial; n=1; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to
           ENSANGP00000009880, partial - Strongylocentrotus
           purpuratus
          Length = 89

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 19/48 (39%), Positives = 29/48 (60%)
 Frame = +3

Query: 54  AVKRVSDSELRRIREAFKRCAGANGTALSLEAFVHEVLCDGVPYDVAE 197
           A   +S+ EL+R+REAFKR +   G  +S   FV +V+ D +P  + E
Sbjct: 43  AESHLSEDELKRLREAFKRYSIPAG-YMSKLIFVKDVMGDAMPQKLGE 89


>UniRef50_Q9VM64 Cluster: CG9211-PA; n=8; Sophophora|Rep: CG9211-PA
           - Drosophila melanogaster (Fruit fly)
          Length = 886

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 27  KPSFITYEDAVKRVSDSELRRIREAFKRCAGANGT 131
           +PS   Y+  ++R+S S LRR +   +R  G+NG+
Sbjct: 802 RPSSYDYDPTLRRMSSSSLRRSQRTLERAGGSNGS 836


>UniRef50_A5GS22 Cluster: Sensor protein; n=1; Synechococcus sp.
           RCC307|Rep: Sensor protein - Synechococcus sp. (strain
           RCC307)
          Length = 367

 Score = 33.1 bits (72), Expect = 6.1
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -3

Query: 489 QDLNWSNVTLSPAPKRPRSISAE--RCAAVAGRD 394
           Q ++W+N T+SP P  P  I +E     A+AGRD
Sbjct: 89  QRVSWTNSTVSPTPLHPEPIRSEPLEAIAIAGRD 122


>UniRef50_Q8WT44 Cluster: Cytokinesis defect protein 3, isoform b;
           n=3; Caenorhabditis|Rep: Cytokinesis defect protein 3,
           isoform b - Caenorhabditis elegans
          Length = 1178

 Score = 33.1 bits (72), Expect = 6.1
 Identities = 20/52 (38%), Positives = 30/52 (57%)
 Frame = +3

Query: 12  GAKDSKPSFITYEDAVKRVSDSELRRIREAFKRCAGANGTALSLEAFVHEVL 167
           G  ++    I+ EDA   +SD E RRIR+AF+R    NG  ++ + F + VL
Sbjct: 7   GRSNAIAPIISAEDAKTYISDEEYRRIRQAFQRF--KNG-CINYDEFCYHVL 55


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 709,510,139
Number of Sequences: 1657284
Number of extensions: 15299196
Number of successful extensions: 42899
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 41398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42882
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50413227838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)