Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021694
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    28   1.0  
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    27   2.4  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    27   3.2  
SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyce...    26   5.6  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    26   5.6  
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|...    25   7.4  

>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 505 RSTVLSKWLLSEVNDVYDLETPTFYQTLAGVTHL 606
           RS +  KW+ +     +D+E P   +TLA VT +
Sbjct: 25  RSYIGGKWVTAASGKTFDVENPGLNETLAPVTDM 58


>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -2

Query: 214 QAWYNHSATSYGTPSHRTS*TKASRLSAVPFAPA--HLLNASLMRLNSLSD 68
           Q  +N  A  +G P   +S  K  +L A+PF     ++LN  L    +++D
Sbjct: 241 QIQFNELAQKFGIPLELSSAEKLEKLRAIPFQDLADNILNLRLHTFRAVTD 291


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 229 LLVPPQAWYNHSATSYGTPSHRTS*TKASRLSAVPFAPAHL 107
           LLVPP  +++  A    TPS     + AS + +V  AP+ L
Sbjct: 139 LLVPPPQFFHSEAGERPTPSVGAPSSLASSMDSVRVAPSML 179


>SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 458 DKVTFDQFRSWLLIHKDLQ 514
           +K++F +F ++  IHKDLQ
Sbjct: 205 EKISFSEFETFADIHKDLQ 223


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +3

Query: 147 AFVHEVLCDGVPYDVAEWLYQACGG--TKRGIAFK 245
           AFV+ +  D VP+D +E + +ACG     R +AFK
Sbjct: 100 AFVNSISSD-VPFDYSESVAEACGFDLNTRVLAFK 133


>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 200

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 407 TAAQRSAEILLGLFGAGDKVTFDQFRSW 490
           TA  R A  +L L+   DK +FD  R+W
Sbjct: 76  TAYYRGAMGILLLYDVTDKKSFDNVRTW 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,866,723
Number of Sequences: 5004
Number of extensions: 61370
Number of successful extensions: 168
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)