Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021694
         (662 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.9  
SB_1703| Best HMM Match : Extensin_2 (HMM E-Value=0.26)                29   4.5  
SB_43153| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_56083| Best HMM Match : DUF1620 (HMM E-Value=5.2)                   28   7.8  

>SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1289

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
 Frame = -2

Query: 658  AIDAFQWSLKRKAAPSL---PNE*HQPRSDKKWGFPDHKHH 545
            A+D   W+LKR   PS    PNE   P S   W    HK H
Sbjct: 898  ALDDVVWALKRGQVPSSWQHPNEQPSPNSLSSWLEAFHKRH 938


>SB_1703| Best HMM Match : Extensin_2 (HMM E-Value=0.26)
          Length = 307

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -3

Query: 270 RTTMPRGVP*MRFPFWCLRRPGITIPQHRTELRRTEPREQKPP 142
           R   PRG    + P W    P IT+   R    R + + Q PP
Sbjct: 265 RARSPRGQRQSKIPPWTAPEPDITVDSARARSPRGQRKSQIPP 307


>SB_43153| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 380

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 192 QHRTELRRTEPREQKPPGSVP 130
           +H  E+ R EPRE + PG  P
Sbjct: 140 KHMKEIERNEPRENESPGVAP 160


>SB_56083| Best HMM Match : DUF1620 (HMM E-Value=5.2)
          Length = 287

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = +1

Query: 331 RR*WLIHI*KGFCSSPAPGEYVSPCHCSAALS*NTPWPLWRRRQSYI*PVQVLATHTQRS 510
           R+ WL  +   F     P    SP   S   +  T  P W RR +   P  + AT+ Q  
Sbjct: 76  RKAWLTVLVLRFVKFQEPPSPPSPSKSSKGGTGITEKPAWDRRTAPPGPPALAATNGQGR 135

Query: 511 TVLS-KWLLSEVNDVYDL 561
           TV++ +W  +   + +D+
Sbjct: 136 TVINRRWRPTNQGNAFDV 153


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,083,580
Number of Sequences: 59808
Number of extensions: 491592
Number of successful extensions: 1325
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)