Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021694
         (662 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC054344-1|AAH54344.1|  390|Homo sapiens USP32 protein protein.        79   2e-14
AF533230-1|AAM97922.1| 1604|Homo sapiens ubiquitin-specific prot...    79   2e-14
BC103913-1|AAI03914.1|  546|Homo sapiens transcription elongatio...    30   6.4  
BC103912-1|AAI03913.1|  544|Homo sapiens TCEB3C protein protein.       30   6.4  
AB076840-1|BAC01113.1|  546|Homo sapiens transcription elongatio...    30   6.4  

>BC054344-1|AAH54344.1|  390|Homo sapiens USP32 protein protein.
          Length = 390

 Score = 78.6 bits (185), Expect = 2e-14
 Identities = 37/78 (47%), Positives = 56/78 (71%)
 Frame = +3

Query: 9   MGAKDSKPSFITYEDAVKRVSDSELRRIREAFKRCAGANGTALSLEAFVHEVLCDGVPYD 188
           MGAK+S+  F++YE+A++RV+D EL+R+++AFKR  G +   +    F+ EVL DGVP  
Sbjct: 1   MGAKESRIGFLSYEEALRRVTDVELKRLKDAFKRTCGLS-YYMGQHCFIREVLGDGVPPK 59

Query: 189 VAEWLYQACGGTKRGIAF 242
           VAE +Y + GGT +G+ F
Sbjct: 60  VAEVIYCSFGGTSKGLHF 77



 Score = 58.8 bits (136), Expect = 2e-08
 Identities = 30/94 (31%), Positives = 55/94 (58%)
 Frame = +2

Query: 227 KGNRIQGTPRGIVVLTKGNLEEKIKFLWTLYVNNQGDNGSYIYKKDFARALHLENTSLPA 406
           KG        G+V+LT+G  EEK K++++L+     ++G+Y+ +++  R LH+ +  +P 
Sbjct: 73  KGLHFNNLIVGLVLLTRGKDEEKAKYIFSLF---SSESGNYVIREEMERMLHVVDGKVPD 129

Query: 407 TAAQRSAEILLGLFGAGDKVTFDQFRSWLLIHKD 508
           T        L   F  G+KV +++FR+WL ++KD
Sbjct: 130 T--------LRKCFSEGEKVNYEKFRNWLFLNKD 155



 Score = 44.4 bits (100), Expect = 4e-04
 Identities = 23/34 (67%), Positives = 25/34 (73%), Gaps = 3/34 (8%)
 Frame = +1

Query: 520 SKWLLSE---VNDVYDLETPTFYQTLAGVTHLEE 612
           S+WLLS    V    D +TPTFYQTLAGVTHLEE
Sbjct: 160 SRWLLSGGVYVTLTDDSDTPTFYQTLAGVTHLEE 193


>AF533230-1|AAM97922.1| 1604|Homo sapiens ubiquitin-specific
           protease USP32 protein.
          Length = 1604

 Score = 78.6 bits (185), Expect = 2e-14
 Identities = 37/78 (47%), Positives = 56/78 (71%)
 Frame = +3

Query: 9   MGAKDSKPSFITYEDAVKRVSDSELRRIREAFKRCAGANGTALSLEAFVHEVLCDGVPYD 188
           MGAK+S+  F++YE+A++RV+D EL+R+++AFKR  G +   +    F+ EVL DGVP  
Sbjct: 1   MGAKESRIGFLSYEEALRRVTDVELKRLKDAFKRTCGLS-YYMGQHCFIREVLGDGVPPK 59

Query: 189 VAEWLYQACGGTKRGIAF 242
           VAE +Y + GGT +G+ F
Sbjct: 60  VAEVIYCSFGGTSKGLHF 77



 Score = 58.8 bits (136), Expect = 2e-08
 Identities = 30/94 (31%), Positives = 55/94 (58%)
 Frame = +2

Query: 227 KGNRIQGTPRGIVVLTKGNLEEKIKFLWTLYVNNQGDNGSYIYKKDFARALHLENTSLPA 406
           KG        G+V+LT+G  EEK K++++L+     ++G+Y+ +++  R LH+ +  +P 
Sbjct: 73  KGLHFNNLIVGLVLLTRGKDEEKAKYIFSLF---SSESGNYVIREEMERMLHVVDGKVPD 129

Query: 407 TAAQRSAEILLGLFGAGDKVTFDQFRSWLLIHKD 508
           T        L   F  G+KV +++FR+WL ++KD
Sbjct: 130 T--------LRKCFSEGEKVNYEKFRNWLFLNKD 155



 Score = 44.4 bits (100), Expect = 4e-04
 Identities = 23/34 (67%), Positives = 25/34 (73%), Gaps = 3/34 (8%)
 Frame = +1

Query: 520 SKWLLSE---VNDVYDLETPTFYQTLAGVTHLEE 612
           S+WLLS    V    D +TPTFYQTLAGVTHLEE
Sbjct: 160 SRWLLSGGVYVTLTDDSDTPTFYQTLAGVTHLEE 193


>BC103913-1|AAI03914.1|  546|Homo sapiens transcription elongation
           factor B polypeptide 3C (elongin A3) protein.
          Length = 546

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 195 PQHRTELRRTEPREQKPPGSVPSRSLR 115
           P+HR   RRT P +Q+P    PSR  R
Sbjct: 126 PEHRRTARRTPPGQQRPHPRSPSREPR 152


>BC103912-1|AAI03913.1|  544|Homo sapiens TCEB3C protein protein.
          Length = 544

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 195 PQHRTELRRTEPREQKPPGSVPSRSLR 115
           P+HR   RRT P +Q+P    PSR  R
Sbjct: 124 PEHRRTARRTPPGQQRPHPRSPSREPR 150


>AB076840-1|BAC01113.1|  546|Homo sapiens transcription elongation
           factor Elongin A3 protein.
          Length = 546

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 195 PQHRTELRRTEPREQKPPGSVPSRSLR 115
           P+HR   RRT P +Q+P    PSR  R
Sbjct: 126 PEHRRTARRTPPGQQRPHPRSPSREPR 152


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,603,732
Number of Sequences: 237096
Number of extensions: 2477588
Number of successful extensions: 5987
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5981
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7478817430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)